Transcript: Human NM_001365795.1

Homo sapiens DAB adaptor protein 1 (DAB1), transcript variant 9, mRNA.

Source:
NCBI, updated 2019-08-21
Taxon:
Homo sapiens (human)
Gene:
DAB1 (1600)
Length:
1765
CDS:
268..519

Additional Resources:

NCBI RefSeq record:
NM_001365795.1
NBCI Gene record:
DAB1 (1600)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001365795.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000063948 GCCAAATTGATCGGGATTGAT pLKO.1 397 CDS 100% 5.625 7.875 N DAB1 n/a
2 TRCN0000177311 GTTATGTCAAGATTCCATGAT pLKO.1 444 CDS 100% 4.950 3.465 N Dab1 n/a
3 TRCN0000063951 GCCACTTTGATAAAGAGGTTT pLKO.1 352 CDS 100% 4.950 2.970 N DAB1 n/a
4 TRCN0000177332 GCCACTTTGATAAAGAGGTTT pLKO.1 352 CDS 100% 4.950 2.970 N Dab1 n/a
5 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 1308 3UTR 100% 5.625 2.813 Y KLHL30 n/a
6 TRCN0000148469 CTGGGTTCAAGCAATTCTCTT pLKO.1 1144 3UTR 100% 4.950 2.475 Y C16orf89 n/a
7 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 1308 3UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001365795.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_15394 pDONR223 0% 16.9% 15.1% None (many diffs) n/a
2 ccsbBroad304_15394 pLX_304 0% 16.9% 15.1% V5 (many diffs) n/a
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