Construct: ORF ccsbBroadEn_15394
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009251.1_s300c1, BRDN0000394145
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- DAB1 (1600)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 1600 | DAB1 | DAB adaptor protein 1 | NM_001353983.1 | 81.2% | 73.8% | (many diffs) |
| 2 | human | 1600 | DAB1 | DAB adaptor protein 1 | NM_001353985.2 | 81.2% | 73.8% | (many diffs) |
| 3 | human | 1600 | DAB1 | DAB adaptor protein 1 | NM_001365792.1 | 81.2% | 73.8% | (many diffs) |
| 4 | human | 1600 | DAB1 | DAB adaptor protein 1 | NM_001365793.1 | 81.2% | 73.8% | (many diffs) |
| 5 | human | 1600 | DAB1 | DAB adaptor protein 1 | NM_021080.5 | 81.2% | 73.8% | (many diffs) |
| 6 | human | 1600 | DAB1 | DAB adaptor protein 1 | NM_001353986.2 | 81.2% | 73.4% | (many diffs) |
| 7 | human | 1600 | DAB1 | DAB adaptor protein 1 | NM_001353980.1 | 16.9% | 15.1% | (many diffs) |
| 8 | human | 1600 | DAB1 | DAB adaptor protein 1 | NM_001365794.1 | 16.9% | 15.1% | (many diffs) |
| 9 | human | 1600 | DAB1 | DAB adaptor protein 1 | NM_001365795.1 | 16.9% | 15.1% | (many diffs) |
| 10 | mouse | 13131 | Dab1 | disabled 1 | XM_011240434.2 | 80.7% | 75% | (many diffs) |
| 11 | mouse | 13131 | Dab1 | disabled 1 | XM_011240435.2 | 80.6% | 74.6% | (many diffs) |
| 12 | mouse | 13131 | Dab1 | disabled 1 | XM_011240431.2 | 77.5% | 79.2% | (many diffs) |
| 13 | mouse | 13131 | Dab1 | disabled 1 | XM_011240432.2 | 77.2% | 78.8% | (many diffs) |
| 14 | mouse | 13131 | Dab1 | disabled 1 | NM_177259.4 | 76.5% | 70.5% | (many diffs) |
| 15 | mouse | 13131 | Dab1 | disabled 1 | XM_011240429.2 | 76.5% | 70.5% | (many diffs) |
| 16 | mouse | 13131 | Dab1 | disabled 1 | XM_011240430.2 | 76.5% | 70.2% | (many diffs) |
| 17 | mouse | 13131 | Dab1 | disabled 1 | XM_011240433.2 | 73.9% | 74.3% | (many diffs) |
| 18 | mouse | 13131 | Dab1 | disabled 1 | XM_017319949.1 | 72.9% | 66% | (many diffs) |
| 19 | mouse | 13131 | Dab1 | disabled 1 | XM_017319950.1 | 72.9% | 66% | (many diffs) |
| 20 | mouse | 13131 | Dab1 | disabled 1 | XM_006502725.3 | 72.9% | 74.4% | (many diffs) |
| 21 | mouse | 13131 | Dab1 | disabled 1 | XM_006502726.1 | 72.9% | 74.4% | (many diffs) |
| 22 | mouse | 13131 | Dab1 | disabled 1 | XM_006502727.3 | 72.9% | 74.4% | (many diffs) |
| 23 | mouse | 13131 | Dab1 | disabled 1 | XM_011240425.2 | 72.9% | 74.4% | (many diffs) |
| 24 | mouse | 13131 | Dab1 | disabled 1 | XM_011240426.1 | 72.9% | 74.4% | (many diffs) |
| 25 | mouse | 13131 | Dab1 | disabled 1 | XM_017319948.1 | 72.9% | 74.4% | (many diffs) |
| 26 | mouse | 13131 | Dab1 | disabled 1 | XM_017319951.1 | 72.9% | 65.7% | (many diffs) |
| 27 | mouse | 13131 | Dab1 | disabled 1 | XM_011240427.2 | 72.6% | 74.1% | (many diffs) |
| 28 | mouse | 13131 | Dab1 | disabled 1 | XM_011240428.2 | 69.5% | 69.9% | (many diffs) |
| 29 | mouse | 13131 | Dab1 | disabled 1 | XM_006502735.1 | 62.5% | 63.7% | (many diffs) |
| 30 | mouse | 13131 | Dab1 | disabled 1 | NR_104385.1 | 22.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1473
- ORF length:
- 1407
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcatgtc aactgagaca gaacttcaag tagctgtgaa aaccagcgcc aagaaagact 121 ccagaaagaa aggtcaggat cgcagtgaag ccactttgat aaagaggttt aaaggtgaag 181 gggtccggta caaagccaaa ttgatcggga ttgatgaagt ttccgcagct cggggagaca 241 tgttatgtca agattccatg atgaaactca agggcgttgt tgctggcgct cgttccaaag 301 gagaacacaa acagaaaatc tttttaacca tctcctttgg aggaatcaaa atctttgatg 361 agaagacagg ggttcccacc agccaaaaga aggaaggtgt ttatgatgtg ccaaaaagtc 421 aacctgtaag taatggctat tcgtttgagg attttgaaga acggtttgct gcagccaccc 481 cgaacagaaa cctgcccaca gactttgatg agatttttga ggcaacgaag gctgtgaccc 541 aattagaact ttttggggac atgtccacac cccctgatat aacctctcct tccactcctg 601 caactccagg tgatgccttt atcccatctt catctcagac ccttccagcg agtgcagatg 661 tgtttagttc tgtacctttc ggcactgctg ctgtaccctc aggttacgtt gcaatgggcg 721 ctgtcctccc gtccttctgg ggtcagcagc ccctcgtcca acagcagatg gtcatgggtg 781 cccagccacc agtcgctcag gtgatgccgg gggctcagcc catcgcatgg ggccagccgg 841 gtctctttcc tgccactcag cagccctggc caactgtggc cgggcagttt ccgccagccg 901 ccttcatgcc cacacaaact gttatgcctt tgccagctgc catgttccaa ggtcccctca 961 ccccccttgc caccgtccca ggcacgagtg actccaccag gtcaagtcca cagaccgaca 1021 agcccaggca gaaaatgggc aaagaaacgt ttaaggattt ccagatggcc cagcctccgc 1081 ccgtgccctc ccgcaaaccc gaccagccct ccctcacctg tacctcagag gccttctcca 1141 gttacttcaa caaagtcggg gtggcacagg atacagacga ctgtgatgac tttgacatct 1201 cccagttgaa tttgacccct gtgacttcta ccacaccatc gaccaactca cctccaaccc 1261 cagcccctag acagagctct ccatccaaat catctgcatc ccatgccagt gatcctacca 1321 cagatgacat ctttgaagag ggctttgaaa gtcccagcaa aagcgaagag caagaagctc 1381 ctgatggatc acaggcctca tccaacagtg atccatttgg tgagcccagt ggggagccca 1441 gtggtgataa tataagtcca caggccggta gctnnccaac tttcttgtac aaagttggca 1501 ttataagaaa gcattgctta tcaatttgtt gcaacgaac