Transcript: Human NM_001370184.1

Homo sapiens synaptotagmin-15 (LOC102724488), transcript variant 3, mRNA.

Source:
NCBI, updated 2019-07-07
Taxon:
Homo sapiens (human)
Gene:
LOC102724488 (102724488)
Length:
11673
CDS:
953..2218

Additional Resources:

NCBI RefSeq record:
NM_001370184.1
NBCI Gene record:
LOC102724488 (102724488)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001370184.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000430981 GCCACCATGCCTGGCTAATTT pLKO_005 3414 3UTR 100% 15.000 7.500 Y GTF2IRD2 n/a
2 TRCN0000380085 TGTGGTTCTCGGTGGAATATG pLKO_005 1404 CDS 100% 13.200 6.600 Y SYT15 n/a
3 TRCN0000380616 CCATCAACCCTGTGTACAATG pLKO_005 1971 CDS 100% 10.800 5.400 Y SYT15 n/a
4 TRCN0000380074 GAATGGACCTGCAGGGTAAAC pLKO_005 2569 3UTR 100% 10.800 5.400 Y SYT15 n/a
5 TRCN0000381499 GAGGCATTGTCAGTGTGTTTG pLKO_005 1884 CDS 100% 10.800 5.400 Y SYT15 n/a
6 TRCN0000059931 GCTGTGGTTCTCGGTGGAATA pLKO.1 1402 CDS 100% 10.800 5.400 Y SYT15 n/a
7 TRCN0000059932 AGAGGCATTGTCAGTGTGTTT pLKO.1 1883 CDS 100% 4.950 2.475 Y SYT15 n/a
8 TRCN0000380084 ATGAACCACAACAAGTTTGTC pLKO_005 1919 CDS 100% 4.950 2.475 Y SYT15 n/a
9 TRCN0000381456 CATCAACCCAGAGCTGTACAA pLKO_005 1330 CDS 100% 4.950 2.475 Y SYT15 n/a
10 TRCN0000084008 CGCCTATAATCCCAGCACTTT pLKO.1 7897 3UTR 100% 4.950 2.475 Y NPHS1 n/a
11 TRCN0000379558 AGGTGTCCAGCAAGACCATCA pLKO_005 1602 CDS 100% 4.050 2.025 Y SYT15 n/a
12 TRCN0000382517 CAATCCAAGACCAAACGCAAA pLKO_005 1544 CDS 100% 4.050 2.025 Y SYT15 n/a
13 TRCN0000382172 GGTGCTGAAGTTCTCCGTCTA pLKO_005 1630 CDS 100% 4.050 2.025 Y SYT15 n/a
14 TRCN0000381073 TTGAAGAATGAGACCCTAGTG pLKO_005 1703 CDS 100% 4.050 2.025 Y SYT15 n/a
15 TRCN0000059929 CCAATCCAAGACCAAACGCAA pLKO.1 1543 CDS 100% 2.640 1.320 Y SYT15 n/a
16 TRCN0000059930 CCCTGTGTACAATGAGACCTT pLKO.1 1978 CDS 100% 2.640 1.320 Y SYT15 n/a
17 TRCN0000059928 CCCTTGAAGAATGAGACCCTA pLKO.1 1700 CDS 100% 2.640 1.320 Y SYT15 n/a
18 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 3523 3UTR 100% 5.625 2.813 Y KLHL30 n/a
19 TRCN0000130146 CAGGTTCAAGTGATTCTCCTA pLKO.1 9787 3UTR 100% 2.640 1.320 Y DICER1-AS1 n/a
20 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 3523 3UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001370184.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.