Transcript: Human NM_001370444.1

Homo sapiens nucleoporin 42 (NUP42), transcript variant 3, mRNA.

Source:
NCBI, updated 2019-08-04
Taxon:
Homo sapiens (human)
Gene:
NUP42 (11097)
Length:
1562
CDS:
39..1301

Additional Resources:

NCBI RefSeq record:
NM_001370444.1
NBCI Gene record:
NUP42 (11097)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001370444.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000129199 CCAGTTCAGGTATCTCTACTT pLKO.1 859 CDS 100% 4.950 6.930 N NUP42 n/a
2 TRCN0000422186 ATGTAAAGGATGGAGTAAATC pLKO_005 646 CDS 100% 13.200 9.240 N NUP42 n/a
3 TRCN0000130187 CCACCTCTGGAACTTCTAAAT pLKO.1 1275 CDS 100% 13.200 9.240 N NUP42 n/a
4 TRCN0000435158 GAATATAAGCTTCCATCAATA pLKO_005 1398 3UTR 100% 13.200 9.240 N NUP42 n/a
5 TRCN0000430737 TAACTTCTTAACCAGCAATAA pLKO_005 527 CDS 100% 13.200 9.240 N NUP42 n/a
6 TRCN0000419844 TACAACTAGCCAGAGATATTC pLKO_005 182 CDS 100% 13.200 9.240 N NUP42 n/a
7 TRCN0000431874 GATTCTGGAGCTTCAACTAAC pLKO_005 288 CDS 100% 10.800 7.560 N NUP42 n/a
8 TRCN0000437474 GTCATCCAGCCATCCAGTTTC pLKO_005 207 CDS 100% 10.800 7.560 N NUP42 n/a
9 TRCN0000128180 CCTCTGGAACTTCTAAATGTT pLKO.1 1278 CDS 100% 5.625 3.938 N NUP42 n/a
10 TRCN0000194170 GAAACTTCTGGAAGGAATTGT pLKO.1 380 CDS 100% 5.625 3.938 N Nupl2 n/a
11 TRCN0000130430 GCAGTGATAATGCTCAGAACT pLKO.1 745 CDS 100% 4.950 3.465 N NUP42 n/a
12 TRCN0000129028 GCAGCATCATTGCAACAGATA pLKO.1 1159 CDS 100% 4.950 2.970 N NUP42 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001370444.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11593 pDONR223 100% 50.5% 47.2% None (many diffs) n/a
2 ccsbBroad304_11593 pLX_304 0% 50.5% 47.2% V5 (many diffs) n/a
3 TRCN0000473939 CCCCCAGAGACTCTGGACACTATT pLX_317 73.4% 50.5% 47.2% V5 (many diffs) n/a
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