Transcript: Human NM_001370472.1

Homo sapiens CCR4-NOT transcription complex subunit 6 (CNOT6), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-09-27
Taxon:
Homo sapiens (human)
Gene:
CNOT6 (57472)
Length:
6219
CDS:
388..2061

Additional Resources:

NCBI RefSeq record:
NM_001370472.1
NBCI Gene record:
CNOT6 (57472)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001370472.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000050614 CCAGGATATATTGAACCTTTA pLKO.1 786 CDS 100% 10.800 15.120 N CNOT6 n/a
2 TRCN0000299414 CCAGGATATATTGAACCTTTA pLKO_005 786 CDS 100% 10.800 15.120 N CNOT6 n/a
3 TRCN0000050617 CAAGGGTATAATAGACTACAT pLKO.1 1845 CDS 100% 4.950 6.930 N CNOT6 n/a
4 TRCN0000299490 CAAGGGTATAATAGACTACAT pLKO_005 1845 CDS 100% 4.950 6.930 N CNOT6 n/a
5 TRCN0000050616 GCGCATCTTTGTGGTCACTAA pLKO.1 518 CDS 100% 4.950 6.930 N CNOT6 n/a
6 TRCN0000331657 GCGCATCTTTGTGGTCACTAA pLKO_005 518 CDS 100% 4.950 6.930 N CNOT6 n/a
7 TRCN0000050613 GCTTTGCATTTGAGTGACAAT pLKO.1 550 CDS 100% 4.950 3.960 N CNOT6 n/a
8 TRCN0000299491 GCTTTGCATTTGAGTGACAAT pLKO_005 550 CDS 100% 4.950 3.960 N CNOT6 n/a
9 TRCN0000050615 GCAACCTCAAATCCAGTGTTT pLKO.1 1562 CDS 100% 4.950 3.465 N CNOT6 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001370472.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.