Transcript: Human NM_001447.2

Homo sapiens FAT atypical cadherin 2 (FAT2), mRNA.

Source:
NCBI, updated 2019-07-29
Taxon:
Homo sapiens (human)
Gene:
FAT2 (2196)
Length:
14565
CDS:
14..13063

Additional Resources:

NCBI RefSeq record:
NM_001447.2
NBCI Gene record:
FAT2 (2196)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001447.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000246138 TACTACTGGTTGACGGTATTA pLKO_005 3317 CDS 100% 13.200 18.480 N FAT2 n/a
2 TRCN0000246139 ATTTGAGGCTGATCCATATAA pLKO_005 8401 CDS 100% 15.000 10.500 N FAT2 n/a
3 TRCN0000246140 ACGCCTGCCCATCAAGTATTA pLKO_005 14106 3UTR 100% 13.200 9.240 N FAT2 n/a
4 TRCN0000246137 CCAGTAGGGAAATCGATAATG pLKO_005 1745 CDS 100% 13.200 9.240 N FAT2 n/a
5 TRCN0000008704 GCTCTGAACCTTCTTTGTTAA pLKO.1 13824 3UTR 100% 13.200 9.240 N FAT2 n/a
6 TRCN0000246141 TGGTGCCCAGGGCAATCATTT pLKO_005 5983 CDS 100% 13.200 9.240 N FAT2 n/a
7 TRCN0000008706 CCAGGGTCAAATCTGCCATAA pLKO.1 11209 CDS 100% 10.800 7.560 N FAT2 n/a
8 TRCN0000008708 CCAGTGCATCACAGAACACAA pLKO.1 2782 CDS 100% 4.950 3.465 N FAT2 n/a
9 TRCN0000008707 GCATCATTACTCTAGCTCAAA pLKO.1 4842 CDS 100% 4.950 3.465 N FAT2 n/a
10 TRCN0000008705 CCACAGTTCAAGAACTGGATT pLKO.1 7008 CDS 100% 0.495 0.347 N FAT2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001447.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.