Transcript: Human NM_002222.6

Homo sapiens inositol 1,4,5-trisphosphate receptor type 1 (ITPR1), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-08-27
Taxon:
Homo sapiens (human)
Gene:
ITPR1 (3708)
Length:
10053
CDS:
351..8438

Additional Resources:

NCBI RefSeq record:
NM_002222.6
NBCI Gene record:
ITPR1 (3708)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_002222.6, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000061244 GCGGCAGAGATTGACACATTT pLKO.1 2139 CDS 100% 13.200 18.480 N ITPR1 n/a
2 TRCN0000236269 TACGCGGAGGGATCGACAAAT pLKO_005 402 CDS 100% 13.200 18.480 N ITPR1 n/a
3 TRCN0000236270 GTGTCATCTCCTGGGTAAATT pLKO_005 9256 3UTR 100% 15.000 12.000 N ITPR1 n/a
4 TRCN0000061245 GCTCGGCATAACAAAGAACTT pLKO.1 6675 CDS 100% 4.950 3.960 N ITPR1 n/a
5 TRCN0000236271 GAGTTTGTGGAGGAGTATTTA pLKO_005 2820 CDS 100% 15.000 10.500 N ITPR1 n/a
6 TRCN0000236267 GGTCGGAATGTCCAGTATATA pLKO_005 4215 CDS 100% 15.000 10.500 N ITPR1 n/a
7 TRCN0000061246 GCGGTTTCATTTGCAAGTTAA pLKO.1 5254 CDS 100% 13.200 9.240 N ITPR1 n/a
8 TRCN0000236268 GTGATAACAAAGACGACATAT pLKO_005 1030 CDS 100% 13.200 9.240 N ITPR1 n/a
9 TRCN0000061247 CCTGCTCTGTTGGAGAAGAAT pLKO.1 765 CDS 100% 5.625 3.938 N ITPR1 n/a
10 TRCN0000061243 GCAGCCATCAACTGGTAGATA pLKO.1 937 CDS 100% 5.625 3.938 N ITPR1 n/a
11 TRCN0000012440 CGAGAGTTTGATGAAAGCAAT pLKO.1 3303 CDS 100% 4.950 3.465 N Itpr1 n/a
12 TRCN0000273767 CGAGAGTTTGATGAAAGCAAT pLKO_005 3303 CDS 100% 4.950 3.465 N Itpr1 n/a
13 TRCN0000012439 CGGCATAACAAAGAACTTCAA pLKO.1 6678 CDS 100% 4.950 6.930 N Itpr1 n/a
14 TRCN0000012442 GCCTCTTTAAGCTATGTCCTA pLKO.1 517 CDS 100% 2.640 3.696 N Itpr1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_002222.6, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.