Transcript: Human NM_002496.4

Homo sapiens NADH:ubiquinone oxidoreductase core subunit S8 (NDUFS8), mRNA.

Source:
NCBI, updated 2019-08-22
Taxon:
Homo sapiens (human)
Gene:
NDUFS8 (4728)
Length:
737
CDS:
54..686

Additional Resources:

NCBI RefSeq record:
NM_002496.4
NBCI Gene record:
NDUFS8 (4728)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_002496.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000036671 CATCAACTACCCGTTCGAGAA pLKO.1 296 CDS 100% 4.050 5.670 N NDUFS8 n/a
2 TRCN0000307806 CATCAACTACCCGTTCGAGAA pLKO_005 296 CDS 100% 4.050 5.670 N NDUFS8 n/a
3 TRCN0000036672 CAACTTTGAGTTCTCCACGGA pLKO.1 560 CDS 100% 0.660 0.924 N NDUFS8 n/a
4 TRCN0000307808 CAACTTTGAGTTCTCCACGGA pLKO_005 560 CDS 100% 0.660 0.924 N NDUFS8 n/a
5 TRCN0000036669 CACCTACAAGTATGTGAACAT pLKO.1 155 CDS 100% 4.950 3.465 N NDUFS8 n/a
6 TRCN0000291899 CACCTACAAGTATGTGAACAT pLKO_005 155 CDS 100% 4.950 3.465 N NDUFS8 n/a
7 TRCN0000036670 CATCGACATGACCAAGTGCAT pLKO.1 485 CDS 100% 2.640 1.848 N NDUFS8 n/a
8 TRCN0000307803 CATCGACATGACCAAGTGCAT pLKO_005 485 CDS 100% 2.640 1.848 N NDUFS8 n/a
9 TRCN0000036673 GCGTTGCATTGCCTGCAAGCT pLKO.1 380 CDS 100% 0.088 0.062 N NDUFS8 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_002496.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.