Transcript: Human NM_003108.4

Homo sapiens SRY-box transcription factor 11 (SOX11), mRNA.

Source:
NCBI, updated 2019-09-16
Taxon:
Homo sapiens (human)
Gene:
SOX11 (6664)
Length:
9002
CDS:
339..1664

Additional Resources:

NCBI RefSeq record:
NM_003108.4
NBCI Gene record:
SOX11 (6664)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_003108.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000417058 AGACGGTCAAGTGCGTGTTTC pLKO_005 982 CDS 100% 10.800 15.120 N SOX11 n/a
2 TRCN0000431124 TTTGAAGCTTGTCGGTCTTTG pLKO_005 2111 3UTR 100% 10.800 15.120 N SOX11 n/a
3 TRCN0000019175 CCGCCTCTACTACAGCTTCAA pLKO.1 1265 CDS 100% 4.950 3.960 N SOX11 n/a
4 TRCN0000416537 TAGTCTGGAGTTGTGATTATT pLKO_005 1973 3UTR 100% 15.000 10.500 N SOX11 n/a
5 TRCN0000019174 GCTCATAATGTTCCATGTATA pLKO.1 7588 3UTR 100% 13.200 9.240 N SOX11 n/a
6 TRCN0000012102 GTTCGACCTGAGCTTGAATTT pLKO.1 1424 CDS 100% 13.200 9.240 N Sox11 n/a
7 TRCN0000365833 TTCGACCTGAGCTTGAATTTC pLKO_005 1425 CDS 100% 13.200 9.240 N Sox11 n/a
8 TRCN0000436149 TTCGACCTGAGCTTGAATTTC pLKO_005 1425 CDS 100% 13.200 9.240 N SOX11 n/a
9 TRCN0000019177 GTTCATGGTATGGTCCAAGAT pLKO.1 503 CDS 100% 4.950 3.465 N SOX11 n/a
10 TRCN0000019176 CTGGTGGATAAGGATTTGGAT pLKO.1 1518 CDS 100% 3.000 2.100 N SOX11 n/a
11 TRCN0000019178 CGCCAGCCAGAGCCCAGAGAA pLKO.1 737 CDS 100% 0.000 0.000 Y SOX11 n/a
12 TRCN0000374003 GCGAGAAGATCCCGTTCATCA pLKO_005 616 CDS 100% 4.950 3.465 N Sox11 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_003108.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.