Transcript: Human NM_003875.3

Homo sapiens guanine monophosphate synthase (GMPS), mRNA.

Source:
NCBI, updated 2019-09-16
Taxon:
Homo sapiens (human)
Gene:
GMPS (8833)
Length:
8631
CDS:
222..2303

Additional Resources:

NCBI RefSeq record:
NM_003875.3
NBCI Gene record:
GMPS (8833)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_003875.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000230038 ACTTTACGGCCTGATCTAATT pLKO_005 1323 CDS 100% 13.200 18.480 N GMPS n/a
2 TRCN0000230040 TCGCATGTGTCACAACGTTAA pLKO_005 1874 CDS 100% 10.800 15.120 N GMPS n/a
3 TRCN0000045942 CCTACAGTTACGTGTGTGGAA pLKO.1 1795 CDS 100% 2.640 3.696 N GMPS n/a
4 TRCN0000230039 ATGTGCTGAAGAACCTTATAT pLKO_005 1565 CDS 100% 15.000 10.500 N GMPS n/a
5 TRCN0000251160 ATGTGCTGAAGAACCTTATAT pLKO_005 1565 CDS 100% 15.000 10.500 N Gmps n/a
6 TRCN0000045940 GCCTGGCAATCAGAGTAATAT pLKO.1 1546 CDS 100% 15.000 10.500 N GMPS n/a
7 TRCN0000045938 CCTGGTTTGATCCAGCAATAT pLKO.1 481 CDS 100% 13.200 9.240 N GMPS n/a
8 TRCN0000218349 GAACAACAACCCTACCAATAT pLKO_005 1138 CDS 100% 13.200 9.240 N GMPS n/a
9 TRCN0000230037 GATCCAGCAATATTCACTATT pLKO_005 489 CDS 100% 13.200 9.240 N GMPS n/a
10 TRCN0000045939 GCACATTGATAATGGCTTTAT pLKO.1 1025 CDS 100% 13.200 9.240 N GMPS n/a
11 TRCN0000045941 GCATTTGCTATAAAGGAACAA pLKO.1 402 CDS 100% 4.950 3.465 N GMPS n/a
12 TRCN0000078113 GCCTGTAATCCCAGCACTTTA pLKO.1 5754 3UTR 100% 13.200 6.600 Y LIAS n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_003875.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.