Transcript: Human NM_003898.4

Homo sapiens synaptojanin 2 (SYNJ2), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-08-22
Taxon:
Homo sapiens (human)
Gene:
SYNJ2 (8871)
Length:
7402
CDS:
100..4590

Additional Resources:

NCBI RefSeq record:
NM_003898.4
NBCI Gene record:
SYNJ2 (8871)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_003898.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000234540 CAAGATGCACATCGCTATTAA pLKO_005 6289 3UTR 100% 15.000 21.000 N SYNJ2 n/a
2 TRCN0000234536 GCGACACGCCTATGATCAATT pLKO_005 1082 CDS 100% 13.200 18.480 N SYNJ2 n/a
3 TRCN0000359696 GCTCGGACTGGAATAAGTAAA pLKO_005 3562 CDS 100% 13.200 18.480 N SYNJ2 n/a
4 TRCN0000234537 CACGCTCTCATAGATACATTC pLKO_005 1946 CDS 100% 10.800 15.120 N SYNJ2 n/a
5 TRCN0000359699 TCCTGTTAAATTCGGTGTATG pLKO_005 4830 3UTR 100% 10.800 15.120 N SYNJ2 n/a
6 TRCN0000359729 TACCGCATTGATCTTACTTAT pLKO_005 2284 CDS 100% 0.000 0.000 N SYNJ2 n/a
7 TRCN0000359766 TTGGACCCACCTACAAGTATG pLKO_005 2426 CDS 100% 10.800 8.640 N SYNJ2 n/a
8 TRCN0000050374 CGAGAGGAGATCATTCGGAAA pLKO.1 3022 CDS 100% 4.050 3.240 N SYNJ2 n/a
9 TRCN0000359796 GAATTGAGCGCAGGGAATATT pLKO_005 1867 CDS 100% 15.000 10.500 N SYNJ2 n/a
10 TRCN0000050373 CCTACGATACAAGCGACAAAT pLKO.1 2462 CDS 100% 13.200 9.240 N SYNJ2 n/a
11 TRCN0000234538 CCTACGATACAAGCGACAAAT pLKO_005 2462 CDS 100% 13.200 9.240 N SYNJ2 n/a
12 TRCN0000359765 CTCTTGAGGCCACAGTTAAAG pLKO_005 1153 CDS 100% 13.200 9.240 N SYNJ2 n/a
13 TRCN0000234539 GGATGCCACTGTTGTAGTAAA pLKO_005 2763 CDS 100% 13.200 9.240 N SYNJ2 n/a
14 TRCN0000359767 GCGTCTGTCTTTATATCTTTG pLKO_005 1991 CDS 100% 10.800 7.560 N SYNJ2 n/a
15 TRCN0000050376 GAAGTCATTAAAGGACAGTAT pLKO.1 241 CDS 100% 4.950 3.465 N SYNJ2 n/a
16 TRCN0000050375 CCGGAAGAACAGTTTGAGCAA pLKO.1 3853 CDS 100% 2.640 1.848 N SYNJ2 n/a
17 TRCN0000379648 AGCAGCATCCAACGTACAAAG pLKO_005 3287 CDS 100% 10.800 6.480 N SYNJ2 n/a
18 TRCN0000050377 CCCACCTACAAGTATGACGTT pLKO.1 2431 CDS 100% 2.640 1.584 N SYNJ2 n/a
19 TRCN0000359697 GAGGTCGTTGTGACCATTAAT pLKO_005 5038 3UTR 100% 15.000 21.000 N SYNJ2 n/a
20 TRCN0000182331 GCTGCTGAAGATCATCTGCTA pLKO.1 639 CDS 100% 2.640 1.848 N Fbxo36 n/a
21 TRCN0000293028 GCTGCTGAAGATCATCTGCTA pLKO_005 639 CDS 100% 2.640 1.848 N Fbxo36 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_003898.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.