Transcript: Human NM_004321.7

Homo sapiens kinesin family member 1A (KIF1A), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-09-25
Taxon:
Homo sapiens (human)
Gene:
KIF1A (547)
Length:
8930
CDS:
248..5320

Additional Resources:

NCBI RefSeq record:
NM_004321.7
NBCI Gene record:
KIF1A (547)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_004321.7, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000271454 CATGACGCAGAGACCAATATC pLKO_005 935 CDS 100% 13.200 18.480 N KIF1A n/a
2 TRCN0000271501 TCCAGCATCTCTGCCGAATAT pLKO_005 3275 CDS 100% 13.200 18.480 N KIF1A n/a
3 TRCN0000271502 CCCTTCAATTCCCGGGAAATG pLKO_005 287 CDS 100% 10.800 15.120 N KIF1A n/a
4 TRCN0000117005 CGCTTATATCGAGATGGAGAA pLKO.1 4054 CDS 100% 4.050 5.670 N KIF1A n/a
5 TRCN0000117006 CCGCTTATATCGAGATGGAGA pLKO.1 4053 CDS 100% 2.640 3.696 N KIF1A n/a
6 TRCN0000284394 GGTTCTTGCTGCCGTTCTAAT pLKO_005 5590 3UTR 100% 13.200 9.240 N KIF1A n/a
7 TRCN0000271500 GTGACTCCAAGTGCATCATTC pLKO_005 312 CDS 100% 10.800 7.560 N KIF1A n/a
8 TRCN0000117002 GCTGAGAAGATGCCAATGTTT pLKO.1 8391 3UTR 100% 5.625 3.938 N KIF1A n/a
9 TRCN0000117004 CGGACCCAACAAGAACAAGAA pLKO.1 1117 CDS 100% 4.950 3.465 N KIF1A n/a
10 TRCN0000117003 CGGTAACTCAAGGACAGCTAT pLKO.1 1207 CDS 100% 4.950 3.465 N KIF1A n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_004321.7, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.