Transcript: Human NM_005577.4

Homo sapiens lipoprotein(a) (LPA), mRNA.

Source:
NCBI, updated 2019-09-15
Taxon:
Homo sapiens (human)
Gene:
LPA (4018)
Length:
6431
CDS:
62..6184

Additional Resources:

NCBI RefSeq record:
NM_005577.4
NBCI Gene record:
LPA (4018)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_005577.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000052012 CGCCAGGACTGAATGTTACAT pLKO.1 5860 CDS 100% 5.625 7.875 N LPA n/a
2 TRCN0000052009 CGCAATGTCCAGTGATGGAAT pLKO.1 4107 CDS 100% 4.950 6.930 N LPA n/a
3 TRCN0000052008 CGAATGTTATTCTGGCTCCAA pLKO.1 3144 CDS 100% 2.640 3.696 N LPA n/a
4 TRCN0000052011 CCTTATTGTTATACGAGGGAT pLKO.1 317 CDS 100% 2.640 3.432 N LPA n/a
5 TRCN0000423971 AGCCCACACAAGCAGATATTG pLKO_005 5757 CDS 100% 13.200 10.560 N LPA n/a
6 TRCN0000424130 ACGGAGTTATCGAGGCATATC pLKO_005 4582 CDS 100% 10.800 7.560 N LPA n/a
7 TRCN0000436430 GTGAAGCATCAACCTACTTAG pLKO_005 6201 3UTR 100% 10.800 7.560 N LPA n/a
8 TRCN0000052010 CCACGGTAATGGACAGAGTTA pLKO.1 1174 CDS 100% 4.950 2.475 Y LPA n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_005577.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.