Transcript: Human NM_006054.4

Homo sapiens reticulon 3 (RTN3), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-06-01
Taxon:
Homo sapiens (human)
Gene:
RTN3 (10313)
Length:
2529
CDS:
138..848

Additional Resources:

NCBI RefSeq record:
NM_006054.4
NBCI Gene record:
RTN3 (10313)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_006054.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000430190 ACGGAATCACCCTTCTAATTC pLKO_005 673 CDS 100% 13.200 18.480 N RTN3 n/a
2 TRCN0000160774 CGAGATCAGACCAAGTCAATT pLKO.1 774 CDS 100% 13.200 18.480 N RTN3 n/a
3 TRCN0000203728 CCGAGATTCAAATCTCCGATT pLKO.1 1859 3UTR 100% 0.405 0.567 N RTN3 n/a
4 TRCN0000164038 CCCGAGATTCAAATCTCCGAT pLKO.1 1858 3UTR 100% 0.264 0.370 N RTN3 n/a
5 TRCN0000186563 GCCCACCTCAAGTTTAATAAA pLKO.1 1650 3UTR 100% 15.000 10.500 N RTN3 n/a
6 TRCN0000414658 CCTACCTGGACGTAGACATTA pLKO_005 490 CDS 100% 13.200 9.240 N RTN3 n/a
7 TRCN0000416729 GTGCGGTGCACGATCTGATTT pLKO_005 274 CDS 100% 13.200 9.240 N RTN3 n/a
8 TRCN0000428221 TCAGAAGCTTTCCATAATTAC pLKO_005 519 CDS 100% 13.200 9.240 N RTN3 n/a
9 TRCN0000203633 CCCGATTGTCTATGAGAAGTA pLKO.1 719 CDS 100% 4.950 3.465 N RTN3 n/a
10 TRCN0000164520 CGTCATCCAAGCTGTACAGAA pLKO.1 443 CDS 100% 4.950 3.465 N RTN3 n/a
11 TRCN0000430803 CTTTGGCACCACGCTGATCAT pLKO_005 326 CDS 100% 4.950 3.465 N RTN3 n/a
12 TRCN0000159418 GAAACTCATTATTCGTCTCTT pLKO.1 575 CDS 100% 4.950 3.465 N RTN3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_006054.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02397 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_02397 pLX_304 0% 100% 100% V5 n/a
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