Transcript: Human NM_006585.4

Homo sapiens chaperonin containing TCP1 subunit 8 (CCT8), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-08-07
Taxon:
Homo sapiens (human)
Gene:
CCT8 (10694)
Length:
1854
CDS:
59..1705

Additional Resources:

NCBI RefSeq record:
NM_006585.4
NBCI Gene record:
CCT8 (10694)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_006585.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000150980 CAAACGATGCAGCAACTATTT pLKO.1 255 CDS 100% 13.200 9.240 N CCT8 n/a
2 TRCN0000428239 CGTACCTCCATAATGAGTAAA pLKO_005 551 CDS 100% 13.200 9.240 N CCT8 n/a
3 TRCN0000438803 ACATGCTGGAAGCTGGTATTC pLKO_005 1530 CDS 100% 10.800 7.560 N CCT8 n/a
4 TRCN0000183655 CAGTAGACGATGGTGTTAATA pLKO.1 1230 CDS 100% 15.000 9.000 N CCT8 n/a
5 TRCN0000423181 GACTTGAACAGTATGCTATTA pLKO_005 1353 CDS 100% 13.200 7.920 N CCT8 n/a
6 TRCN0000420385 GCAGTAGACGATGGTGTTAAT pLKO_005 1229 CDS 100% 13.200 7.920 N CCT8 n/a
7 TRCN0000442235 GCTCAGGCATGCGTATCTATT pLKO_005 608 CDS 100% 13.200 7.920 N CCT8 n/a
8 TRCN0000183512 GCACAAACTTTGTTCTGGTAT pLKO.1 357 CDS 100% 4.950 2.970 N CCT8 n/a
9 TRCN0000151542 GTGTTGATAAAGACTGCTGAA pLKO.1 827 CDS 100% 4.050 2.430 N CCT8 n/a
10 TRCN0000152385 GCCAAACAGATCACATCATAT pLKO.1 1316 CDS 100% 13.200 6.600 Y CCT8 n/a
11 TRCN0000183584 GCCAATGAAGTAATCTCTAAA pLKO.1 1436 CDS 100% 13.200 6.600 Y CCT8 n/a
12 TRCN0000150502 GAGGCTGTGTATAGAAACATA pLKO.1 137 CDS 100% 5.625 2.813 Y CCT8 n/a
13 TRCN0000120474 GCTGAAGAACTTCTGAGGATT pLKO.1 401 CDS 100% 4.950 2.475 Y Cct8 n/a
14 TRCN0000350212 GCTGAAGAACTTCTGAGGATT pLKO_005 401 CDS 100% 4.950 2.475 Y Cct8 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_006585.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.