Transcript: Human NM_007017.2

Homo sapiens SRY-box transcription factor 30 (SOX30), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-09-24
Taxon:
Homo sapiens (human)
Gene:
SOX30 (11063)
Length:
2787
CDS:
343..1848

Additional Resources:

NCBI RefSeq record:
NM_007017.2
NBCI Gene record:
SOX30 (11063)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_007017.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000017424 CCCTATTACGATGAAGCACAA pLKO.1 1495 CDS 100% 4.050 5.670 N SOX30 n/a
2 TRCN0000017423 CCCTTCAGTAAGGACAGAAAT pLKO.1 1324 CDS 100% 13.200 9.240 N SOX30 n/a
3 TRCN0000017425 CCTCTAAGTGTTTCCAATGTA pLKO.1 1591 CDS 100% 5.625 3.938 N SOX30 n/a
4 TRCN0000017426 CCCATCACTCATCCAGTTGTA pLKO.1 1711 CDS 100% 4.950 3.465 N SOX30 n/a
5 TRCN0000017427 GCTTGGGTTAGAGTGGAACAA pLKO.1 1452 CDS 100% 4.950 3.465 N SOX30 n/a
6 TRCN0000081922 GCCTCCCTTTGGCTATGGAAA pLKO.1 1748 CDS 100% 4.950 2.970 N Sox30 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_007017.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.