Transcript: Mouse NM_007415.2

Mus musculus poly (ADP-ribose) polymerase family, member 1 (Parp1), mRNA.

Source:
NCBI, updated 2017-04-30
Taxon:
Mus musculus (mouse)
Gene:
Parp1 (11545)
Length:
3845
CDS:
60..3104

Additional Resources:

NCBI RefSeq record:
NM_007415.2
NBCI Gene record:
Parp1 (11545)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_007415.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000071211 GAGTACATTGTCTACGACATT pLKO.1 3021 CDS 100% 4.950 6.930 N Parp1 n/a
2 TRCN0000353959 GAGTACATTGTCTACGACATT pLKO_005 3021 CDS 100% 4.950 6.930 N Parp1 n/a
3 TRCN0000071210 CGGCCATCAAGAATGAAGGAA pLKO.1 658 CDS 100% 3.000 2.400 N Parp1 n/a
4 TRCN0000305949 GGTTCATCTTTGCTTTAATTT pLKO_005 3498 3UTR 100% 15.000 10.500 N Parp1 n/a
5 TRCN0000305948 TCGACGTCAACTACGAGAAAC pLKO_005 2428 CDS 100% 10.800 7.560 N Parp1 n/a
6 TRCN0000071209 GCCCTTGGAAACATGTATGAA pLKO.1 2832 CDS 100% 5.625 3.938 N Parp1 n/a
7 TRCN0000325059 GCCCTTGGAAACATGTATGAA pLKO_005 2832 CDS 100% 5.625 3.938 N Parp1 n/a
8 TRCN0000071208 CCTCTTAGTCTGCTGAGCTTT pLKO.1 3605 3UTR 100% 4.950 3.465 N Parp1 n/a
9 TRCN0000071212 GCAAGAAATGCAGCGAGAGTA pLKO.1 121 CDS 100% 4.950 3.465 N Parp1 n/a
10 TRCN0000324988 GCAAGAAATGCAGCGAGAGTA pLKO_005 121 CDS 100% 4.950 3.465 N Parp1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_007415.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.