Transcript: Mouse NM_007525.3

Mus musculus BRCA1 associated RING domain 1 (Bard1), mRNA.

Source:
NCBI, updated 2017-05-21
Taxon:
Mus musculus (mouse)
Gene:
Bard1 (12021)
Length:
5448
CDS:
166..2463

Additional Resources:

NCBI RefSeq record:
NM_007525.3
NBCI Gene record:
Bard1 (12021)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_007525.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000422993 ACAACGGCCATTGTGATATTT pLKO_005 2513 3UTR 100% 15.000 21.000 N Bard1 n/a
2 TRCN0000084435 CCACGGGTAAATGGTGAAATA pLKO.1 898 CDS 100% 13.200 18.480 N Bard1 n/a
3 TRCN0000084437 CGAAGTAAGAAGGTTAGATAT pLKO.1 589 CDS 100% 13.200 18.480 N Bard1 n/a
4 TRCN0000434083 GTTAAATCCACGTGGTGTATT pLKO_005 2867 3UTR 100% 13.200 18.480 N Bard1 n/a
5 TRCN0000084433 GCTTCTATTAAGGGTGATATA pLKO.1 1432 CDS 100% 13.200 10.560 N Bard1 n/a
6 TRCN0000416289 TCGTCTACGAAGACCTGTTTA pLKO_005 2339 CDS 100% 13.200 10.560 N Bard1 n/a
7 TRCN0000435013 AGGAATGCTGTTAACATATTT pLKO_005 1687 CDS 100% 15.000 10.500 N Bard1 n/a
8 TRCN0000084434 CCTCAAGATAAACCGACAATT pLKO.1 429 CDS 100% 13.200 9.240 N Bard1 n/a
9 TRCN0000430240 GAAACAAAGGATAGTAGATTT pLKO_005 811 CDS 100% 13.200 9.240 N Bard1 n/a
10 TRCN0000419208 GCTGTTCCTAAGAGTGCTAAA pLKO_005 712 CDS 100% 10.800 7.560 N Bard1 n/a
11 TRCN0000003747 GCTGTTTGATGGATGCTACTT pLKO.1 2139 CDS 100% 4.950 3.465 N BARD1 n/a
12 TRCN0000084436 CCTGTGGACTATACAGACAAT pLKO.1 1717 CDS 100% 4.950 2.970 N Bard1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_007525.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.