Transcript: Mouse NM_007530.3

Mus musculus B cell receptor associated protein 29 (Bcap29), transcript variant 1, mRNA.

Source:
NCBI, updated 2017-05-27
Taxon:
Mus musculus (mouse)
Gene:
Bcap29 (12033)
Length:
1954
CDS:
244..966

Additional Resources:

NCBI RefSeq record:
NM_007530.3
NBCI Gene record:
Bcap29 (12033)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_007530.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000365011 GACGTCTGGTTACGCTTATTA pLKO_005 596 CDS 100% 15.000 21.000 N BCAP29 n/a
2 TRCN0000099814 CCTTTATTCCTCCACAGAGAT pLKO.1 317 CDS 100% 4.950 6.930 N Bcap29 n/a
3 TRCN0000326785 CCTTTATTCCTCCACAGAGAT pLKO_005 317 CDS 100% 4.950 6.930 N Bcap29 n/a
4 TRCN0000099810 GCACTGTTGATAGTGTGTGTT pLKO.1 1504 3UTR 100% 4.950 6.930 N Bcap29 n/a
5 TRCN0000326786 GCACTGTTGATAGTGTGTGTT pLKO_005 1504 3UTR 100% 4.950 6.930 N Bcap29 n/a
6 TRCN0000099813 TCAGAACTTCAGAACCGTTTA pLKO.1 919 CDS 100% 10.800 7.560 N Bcap29 n/a
7 TRCN0000326853 TCAGAACTTCAGAACCGTTTA pLKO_005 919 CDS 100% 10.800 7.560 N Bcap29 n/a
8 TRCN0000099812 GCACACACAGATGAAGCTCTT pLKO.1 516 CDS 100% 4.050 2.835 N Bcap29 n/a
9 TRCN0000326852 GCACACACAGATGAAGCTCTT pLKO_005 516 CDS 100% 4.050 2.835 N Bcap29 n/a
10 TRCN0000099811 GCTGCCAAGAAATTCATGGAA pLKO.1 682 CDS 100% 3.000 2.100 N Bcap29 n/a
11 TRCN0000326854 GCTGCCAAGAAATTCATGGAA pLKO_005 682 CDS 100% 3.000 2.100 N Bcap29 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_007530.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.