Transcript: Mouse NM_007611.2

Mus musculus caspase 7 (Casp7), mRNA.

Source:
NCBI, updated 2017-06-03
Taxon:
Mus musculus (mouse)
Gene:
Casp7 (12369)
Length:
2350
CDS:
190..1101

Additional Resources:

NCBI RefSeq record:
NM_007611.2
NBCI Gene record:
Casp7 (12369)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_007611.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000012193 CGTTCGTTGATGAATCCAGTT pLKO.1 1128 3UTR 100% 4.050 5.670 N Casp7 n/a
2 TRCN0000297287 CGTTCGTTGATGAATCCAGTT pLKO_005 1128 3UTR 100% 4.050 5.670 N Casp7 n/a
3 TRCN0000012196 GACCTGATTTACGGGAAAGAT pLKO.1 631 CDS 100% 5.625 3.938 N Casp7 n/a
4 TRCN0000297348 GACCTGATTTACGGGAAAGAT pLKO_005 631 CDS 100% 5.625 3.938 N Casp7 n/a
5 TRCN0000012194 CCCTCTTCAAGTGCTTCCAAA pLKO.1 476 CDS 100% 4.950 3.465 N Casp7 n/a
6 TRCN0000012195 CCGCATGGATTTCCAGAAGAT pLKO.1 369 CDS 100% 4.950 3.465 N Casp7 n/a
7 TRCN0000280131 CCGCATGGATTTCCAGAAGAT pLKO_005 369 CDS 100% 4.950 3.465 N Casp7 n/a
8 TRCN0000012197 CGGTTCCAGGTTATTACTCAT pLKO.1 863 CDS 100% 4.950 3.465 N Casp7 n/a
9 TRCN0000280132 CGGTTCCAGGTTATTACTCAT pLKO_005 863 CDS 100% 4.950 3.465 N Casp7 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_007611.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.