Transcript: Mouse NM_007979.2

Mus musculus coagulation factor IX (F9), transcript variant 1, mRNA.

Source:
NCBI, updated 2017-06-10
Taxon:
Mus musculus (mouse)
Gene:
F9 (14071)
Length:
2735
CDS:
1..1416

Additional Resources:

NCBI RefSeq record:
NM_007979.2
NBCI Gene record:
F9 (14071)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_007979.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000031693 CAGTCCTGATAACAAGGTAAT pLKO.1 441 CDS 100% 10.800 8.640 N F9 n/a
2 TRCN0000031692 CCCGTCCAAAGAGATATAATT pLKO.1 125 CDS 100% 15.000 10.500 N F9 n/a
3 TRCN0000031689 GCCTTGCTGGAACTGGATAAA pLKO.1 979 CDS 100% 13.200 9.240 N F9 n/a
4 TRCN0000031691 CAAGTTTCTTAACTGGCATTA pLKO.1 1295 CDS 100% 10.800 7.560 N F9 n/a
5 TRCN0000031690 CCTGTGAACCAACAGTTCCAT pLKO.1 506 CDS 100% 3.000 2.100 N F9 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_007979.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_00531 pDONR223 100% 84.3% 80.2% None (many diffs) n/a
2 ccsbBroad304_00531 pLX_304 0% 84.3% 80.2% V5 (many diffs) n/a
Download CSV