Transcript: Mouse NM_008105.3

Mus musculus glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (Gcnt2), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-02-23
Taxon:
Mus musculus (mouse)
Gene:
Gcnt2 (14538)
Length:
4383
CDS:
610..1815

Additional Resources:

NCBI RefSeq record:
NM_008105.3
NBCI Gene record:
Gcnt2 (14538)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_008105.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000321200 ATACAGCCGAGCTGGTATTTC pLKO_005 1792 CDS 100% 13.200 18.480 N Gcnt2 n/a
2 TRCN0000321199 ATTTCTGGGTGACGCTCAATA pLKO_005 1499 CDS 100% 13.200 17.160 N Gcnt2 n/a
3 TRCN0000321132 GACTTGCAGTGGCTGATTAAT pLKO_005 1663 CDS 100% 15.000 12.000 N Gcnt2 n/a
4 TRCN0000350562 GTGACCCAAAGCCACTATATC pLKO_005 835 CDS 100% 13.200 10.560 N Gcnt2 n/a
5 TRCN0000009757 CCTGTGGAGAAACAAACTAAT pLKO.1 783 CDS 100% 13.200 9.240 N Gcnt2 n/a
6 TRCN0000009754 GCCTCTTGAATGTCTATGATT pLKO.1 3086 3UTR 100% 5.625 3.938 N Gcnt2 n/a
7 TRCN0000321129 GCCTCTTGAATGTCTATGATT pLKO_005 3086 3UTR 100% 5.625 3.938 N Gcnt2 n/a
8 TRCN0000009756 GCTTCGAGAAAGAACACTCAA pLKO.1 1755 CDS 100% 4.950 3.465 N Gcnt2 n/a
9 TRCN0000009755 GCACAGAATATGTGACCCAAA pLKO.1 824 CDS 100% 4.050 2.835 N Gcnt2 n/a
10 TRCN0000011818 GCTGACCTGAACTGCATCAAA pLKO.1 1108 CDS 100% 5.625 3.375 N Gcnt2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_008105.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.