Transcript: Mouse NM_008625.2

Mus musculus mannose receptor, C type 1 (Mrc1), mRNA.

Source:
NCBI, updated 2017-05-27
Taxon:
Mus musculus (mouse)
Gene:
Mrc1 (17533)
Length:
5322
CDS:
100..4470

Additional Resources:

NCBI RefSeq record:
NM_008625.2
NBCI Gene record:
Mrc1 (17533)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_008625.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000054797 GCATGTTAATCAGCATGGATA pLKO.1 2687 CDS 100% 4.950 6.930 N Mrc1 n/a
2 TRCN0000054793 CGGAAGCTGAATCCCAGAAAT pLKO.1 251 CDS 100% 13.200 9.240 N Mrc1 n/a
3 TRCN0000054795 CCTCTGGTGAACGGAATGATT pLKO.1 4070 CDS 100% 5.625 3.938 N Mrc1 n/a
4 TRCN0000155911 CCTCTGGTGAACGGAATGATT pLKO.1 4070 CDS 100% 5.625 3.938 N MRC1 n/a
5 TRCN0000054796 CCAAATGATGAGCTGTGGATT pLKO.1 1351 CDS 100% 4.950 3.465 N Mrc1 n/a
6 TRCN0000054794 GCACCCATTTAATGTACCCAT pLKO.1 3534 CDS 100% 2.640 1.848 N Mrc1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_008625.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.