Transcript: Mouse NM_008992.2

Mus musculus ATP-binding cassette, sub-family D (ALD), member 4 (Abcd4), mRNA.

Source:
NCBI, updated 2017-05-28
Taxon:
Mus musculus (mouse)
Gene:
Abcd4 (19300)
Length:
2527
CDS:
147..1967

Additional Resources:

NCBI RefSeq record:
NM_008992.2
NBCI Gene record:
Abcd4 (19300)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_008992.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000298675 CTTCGGGAGCAGGTGATATAT pLKO_005 1554 CDS 100% 15.000 21.000 N Abcd4 n/a
2 TRCN0000298676 CTTCGGGAGCAGGTGATATAT pLKO_005 1554 CDS 100% 15.000 21.000 N ABCD4 n/a
3 TRCN0000105262 CCCAGATTAGATCTGCAACTT pLKO.1 186 CDS 100% 4.950 6.930 N Abcd4 n/a
4 TRCN0000105263 CCAGTCAGTATTATGGAGTCT pLKO.1 337 CDS 100% 2.640 3.696 N Abcd4 n/a
5 TRCN0000308304 CCAGTCAGTATTATGGAGTCT pLKO_005 337 CDS 100% 2.640 3.696 N Abcd4 n/a
6 TRCN0000304956 TGACCAGCAAGCTGATCATTT pLKO_005 625 CDS 100% 13.200 9.240 N Abcd4 n/a
7 TRCN0000105261 CCTGTGAGCATCTTTGGATAT pLKO.1 705 CDS 100% 10.800 7.560 N Abcd4 n/a
8 TRCN0000105264 TGACTAGAATCAAACTGGAAT pLKO.1 1945 CDS 100% 4.950 3.465 N Abcd4 n/a
9 TRCN0000308310 TGACTAGAATCAAACTGGAAT pLKO_005 1945 CDS 100% 4.950 3.465 N Abcd4 n/a
10 TRCN0000105260 CCATGACTTCTTACTTCAGAT pLKO.1 2153 3UTR 100% 4.950 2.970 N Abcd4 n/a
11 TRCN0000315487 CCATGACTTCTTACTTCAGAT pLKO_005 2153 3UTR 100% 4.950 2.970 N Abcd4 n/a
12 TRCN0000054408 ACGCCTTTAATCCCAGCACTT pLKO.1 2272 3UTR 100% 4.050 2.025 Y Mtif2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_008992.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.