Transcript: Mouse NM_009174.3

Mus musculus seven in absentia 2 (Siah2), mRNA.

Source:
NCBI, updated 2017-05-28
Taxon:
Mus musculus (mouse)
Gene:
Siah2 (20439)
Length:
2488
CDS:
574..1551

Additional Resources:

NCBI RefSeq record:
NM_009174.3
NBCI Gene record:
Siah2 (20439)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_009174.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000087602 CACCACTTCATGCTGGTACTT pLKO.1 1255 CDS 100% 4.950 6.930 N Siah2 n/a
2 TRCN0000327575 CACCACTTCATGCTGGTACTT pLKO_005 1255 CDS 100% 4.950 6.930 N Siah2 n/a
3 TRCN0000351053 TCTGTGAATACCGTCCTTATT pLKO_005 1055 CDS 100% 13.200 10.560 N Siah2 n/a
4 TRCN0000087599 CCTTGGAATCAATGTCACGAT pLKO.1 1512 CDS 100% 2.640 2.112 N Siah2 n/a
5 TRCN0000327491 CCTTGGAATCAATGTCACGAT pLKO_005 1512 CDS 100% 2.640 2.112 N Siah2 n/a
6 TRCN0000340179 ACCTTTCAGGCTGGGTATTTA pLKO_005 1929 3UTR 100% 15.000 10.500 N Siah2 n/a
7 TRCN0000087598 CCAGGATCTAAAGGTGCTTTA pLKO.1 2063 3UTR 100% 10.800 7.560 N Siah2 n/a
8 TRCN0000087600 CGAAAGCAAGCTGAGAACTTT pLKO.1 1339 CDS 100% 5.625 3.938 N Siah2 n/a
9 TRCN0000007416 GCCTACAGACTGGAGTTGAAT pLKO.1 1360 CDS 100% 5.625 3.938 N SIAH2 n/a
10 TRCN0000087601 CATCTGTGAATACCGTCCTTA pLKO.1 1053 CDS 100% 4.950 3.465 N Siah2 n/a
11 TRCN0000007418 ACACAGCCATAGCACATCTTT pLKO.1 1475 CDS 100% 5.625 3.938 N SIAH2 n/a
12 TRCN0000297339 ACACAGCCATAGCACATCTTT pLKO_005 1475 CDS 100% 5.625 3.938 N SIAH2 n/a
13 TRCN0000178741 CACACACATACACACACACAA pLKO.1 2435 3UTR 100% 4.950 2.475 Y Cstad n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_009174.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.