Transcript: Mouse NM_009440.3

Mus musculus testis specific X-linked gene (Tsx), mRNA.

Source:
NCBI, updated 2017-06-10
Taxon:
Mus musculus (mouse)
Gene:
Tsx (22127)
Length:
819
CDS:
87..521

Additional Resources:

NCBI RefSeq record:
NM_009440.3
NBCI Gene record:
Tsx (22127)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_009440.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000437540 AGAGTCAGCAGTACCGATGAT pLKO_005 297 CDS 100% 4.950 3.465 N Tsx n/a
2 TRCN0000177001 GAATTTCTTCACCTGCAAGAT pLKO.1 261 CDS 100% 4.950 3.465 N Tsx n/a
3 TRCN0000178351 GCTGGATGTACTGAAGATGAT pLKO.1 333 CDS 100% 4.950 3.465 N Tsx n/a
4 TRCN0000421393 AGAATGCAGTGCAATGGACTT pLKO_005 122 CDS 100% 4.050 2.835 N Tsx n/a
5 TRCN0000182595 GAAACGTGTCACCATCAGCTA pLKO.1 533 3UTR 100% 2.640 1.848 N Tsx n/a
6 TRCN0000182868 CCCTCCATGTATATGGAGATG pLKO.1 423 CDS 100% 0.405 0.284 N Tsx n/a
7 TRCN0000219582 CCATGAACCCAACTGATTAAG pLKO.1 502 CDS 100% 13.200 7.920 N Tsx n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_009440.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.