Transcript: Mouse NM_009485.1

Mus musculus vomeronasal 2, receptor 123 (Vmn2r123), mRNA.

Source:
NCBI, updated 2013-04-18
Taxon:
Mus musculus (mouse)
Gene:
Vmn2r123 (22300)
Length:
3045
CDS:
57..2609

Additional Resources:

NCBI RefSeq record:
NM_009485.1
NBCI Gene record:
Vmn2r123 (22300)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_009485.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000186903 CCCTTTATTGACAGAGACATA pLKO.1 2214 CDS 100% 4.950 2.970 N LOC436147 n/a
2 TRCN0000027904 GCTGTTTGACTGAACCAAGTT pLKO.1 118 CDS 100% 4.950 2.970 N Vmn2r123 n/a
3 TRCN0000187985 CATACAATCTGAGCATGGGAA pLKO.1 2231 CDS 100% 2.640 1.584 N LOC436147 n/a
4 TRCN0000028019 CCACAAAGGTAAATTGCTTTA pLKO.1 2585 CDS 100% 10.800 5.400 Y Vmn2r122 n/a
5 TRCN0000104880 GCTGTATCATTTCTGGCTTAT pLKO.1 1776 CDS 100% 10.800 5.400 Y Vmn2r-ps159 n/a
6 TRCN0000027905 CCTTGATGTTTCACTTTAGAT pLKO.1 649 CDS 100% 5.625 2.813 Y Vmn2r123 n/a
7 TRCN0000042746 GCAAGTGAATATGAGTTTCTT pLKO.1 270 CDS 100% 5.625 2.813 Y Vmn2r89 n/a
8 TRCN0000042752 CATACTATATTGGAGTGGAAT pLKO.1 1098 CDS 100% 4.950 2.475 Y Vmn2r-ps159 n/a
9 TRCN0000188381 CTAGGAACCTTCCTGACACAT pLKO.1 2353 CDS 100% 4.950 2.475 Y LOC436147 n/a
10 TRCN0000104882 CTTTGGACCATTTAATCCTAA pLKO.1 551 CDS 100% 4.950 2.475 Y Vmn2r-ps159 n/a
11 TRCN0000027921 GCAGCAAGTGAATATGAGTTT pLKO.1 267 CDS 100% 4.950 2.475 Y Vmn2r123 n/a
12 TRCN0000027902 GCAGGTGTCTTCCTTGATGAA pLKO.1 1346 CDS 100% 4.950 2.475 Y Vmn2r123 n/a
13 TRCN0000042748 GCATGGGATCTGTTTAGCTTT pLKO.1 749 CDS 100% 4.950 2.475 Y Vmn2r-ps159 n/a
14 TRCN0000042751 GTCAGGATTTATTGAGAGTTA pLKO.1 382 CDS 100% 4.950 2.475 Y Vmn2r-ps159 n/a
15 TRCN0000027858 GCAAACAATGAACACTGCCAA pLKO.1 1058 CDS 100% 2.640 1.320 Y Vmn2r123 n/a
16 TRCN0000188910 GCTTTCAAGCTCACTACTCCA pLKO.1 2085 CDS 100% 2.640 1.320 Y LOC436147 n/a
17 TRCN0000257361 CAGACCACATTTGGAGTATTT pLKO_005 2013 CDS 100% 13.200 6.600 Y Gm20783 n/a
18 TRCN0000104930 CCTCCCTTTATTGACAGAGAT pLKO.1 2211 CDS 100% 4.950 2.475 Y Vmn2r122 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_009485.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.