Transcript: Mouse NM_009486.3

Mus musculus vomeronasal 2, receptor 89 (Vmn2r89), transcript variant 1, mRNA.

Source:
NCBI, updated 2013-10-30
Taxon:
Mus musculus (mouse)
Gene:
Vmn2r89 (22301)
Length:
2737
CDS:
81..1379

Additional Resources:

NCBI RefSeq record:
NM_009486.3
NBCI Gene record:
Vmn2r89 (22301)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_009486.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000042740 ACTTTGATATTCAGCATCGTT pLKO.1 375 CDS 100% 3.000 2.100 N Vmn2r89 n/a
2 TRCN0000042739 GATTCTTCAATACCAATGGTT pLKO.1 552 CDS 100% 3.000 2.100 N Vmn2r89 n/a
3 TRCN0000042742 AGGTAGAACACAACAGATATT pLKO.1 1336 CDS 100% 13.200 7.920 N Vmn2r89 n/a
4 TRCN0000042744 GCTTCAGAAGATGGGAAGATT pLKO.1 922 CDS 100% 5.625 3.375 N Vmn2r89 n/a
5 TRCN0000257361 CAGACCACATTTGGAGTATTT pLKO_005 1682 3UTR 100% 13.200 6.600 Y Gm20783 n/a
6 TRCN0000042746 GCAAGTGAATATGAGTTTCTT pLKO.1 294 CDS 100% 5.625 2.813 Y Vmn2r89 n/a
7 TRCN0000042738 CCTCCATTTATTGACAGAGAT pLKO.1 1880 3UTR 100% 4.950 2.475 Y Vmn2r89 n/a
8 TRCN0000188381 CTAGGAACCTTCCTGACACAT pLKO.1 2022 3UTR 100% 4.950 2.475 Y LOC436147 n/a
9 TRCN0000104882 CTTTGGACCATTTAATCCTAA pLKO.1 575 CDS 100% 4.950 2.475 Y Vmn2r-ps159 n/a
10 TRCN0000042741 GCACACCACAAAGTTGAGATT pLKO.1 1041 CDS 100% 4.950 2.475 Y Vmn2r89 n/a
11 TRCN0000042748 GCATGGGATCTGTTTAGCTTT pLKO.1 773 CDS 100% 4.950 2.475 Y Vmn2r-ps159 n/a
12 TRCN0000042745 GCTGTTTGACTGAAGCAAGTT pLKO.1 142 CDS 100% 4.950 2.475 Y Vmn2r89 n/a
13 TRCN0000027858 GCAAACAATGAACACTGCCAA pLKO.1 1082 CDS 100% 2.640 1.320 Y Vmn2r123 n/a
14 TRCN0000104880 GCTGTATCATTTCTGGCTTAT pLKO.1 1445 3UTR 100% 10.800 5.400 Y Vmn2r-ps159 n/a
15 TRCN0000104883 TGGAGGATAAAGAATAGTGAT pLKO.1 168 CDS 100% 4.950 2.475 Y Vmn2r-ps159 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_009486.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.