Transcript: Mouse NM_009805.4

Mus musculus CASP8 and FADD-like apoptosis regulator (Cflar), transcript variant 2, mRNA.

Source:
NCBI, updated 2017-05-20
Taxon:
Mus musculus (mouse)
Gene:
Cflar (12633)
Length:
2036
CDS:
506..1153

Additional Resources:

NCBI RefSeq record:
NM_009805.4
NBCI Gene record:
Cflar (12633)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_009805.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000031004 CCAAGGAGCAAGATCAAATAT pLKO.1 1045 CDS 100% 15.000 10.500 N Cflar n/a
2 TRCN0000301283 CCAAGGAGCAAGATCAAATAT pLKO_005 1045 CDS 100% 15.000 10.500 N Cflar n/a
3 TRCN0000031008 CCTCACCTGGTTTCTGATTAT pLKO.1 779 CDS 100% 13.200 9.240 N Cflar n/a
4 TRCN0000331487 CCTCACCTGGTTTCTGATTAT pLKO_005 779 CDS 100% 13.200 9.240 N Cflar n/a
5 TRCN0000031006 CGAGAAGGAGATGATGCTCTT pLKO.1 568 CDS 100% 4.050 2.835 N Cflar n/a
6 TRCN0000331424 CGAGAAGGAGATGATGCTCTT pLKO_005 568 CDS 100% 4.050 2.835 N Cflar n/a
7 TRCN0000031005 CCTTCTCAAGAGGATCTTGAA pLKO.1 718 CDS 100% 0.495 0.347 N Cflar n/a
8 TRCN0000301284 CCTTCTCAAGAGGATCTTGAA pLKO_005 718 CDS 100% 0.495 0.347 N Cflar n/a
9 TRCN0000031007 GCCTGAAGAACATCCACAGAA pLKO.1 984 CDS 100% 4.950 2.970 N Cflar n/a
10 TRCN0000301211 GCCTGAAGAACATCCACAGAA pLKO_005 984 CDS 100% 4.950 2.970 N Cflar n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_009805.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.