Transcript: Mouse NM_009880.3

Mus musculus caudal type homeobox 1 (Cdx1), mRNA.

Source:
NCBI, updated 2017-06-04
Taxon:
Mus musculus (mouse)
Gene:
Cdx1 (12590)
Length:
1750
CDS:
80..886

Additional Resources:

NCBI RefSeq record:
NM_009880.3
NBCI Gene record:
Cdx1 (12590)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_009880.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000096346 CCCGTCAAGGAGGAGTTTCTA pLKO.1 860 CDS 100% 5.625 7.875 N Cdx1 n/a
2 TRCN0000096344 CGGCATTGAAAGAAGGTGGTA pLKO.1 1287 3UTR 100% 2.640 3.696 N Cdx1 n/a
3 TRCN0000435271 GAAGTCTATGCCCTACTAATG pLKO_005 810 CDS 100% 10.800 8.640 N Cdx1 n/a
4 TRCN0000096347 GCGCAAAGTAAACAAGAAGAA pLKO.1 706 CDS 100% 4.950 3.960 N Cdx1 n/a
5 TRCN0000096348 CAGCGGTAAGACCCGAACCAA pLKO.1 520 CDS 100% 1.000 0.800 N Cdx1 n/a
6 TRCN0000428078 AGGGATCTAGGGACTTGAATG pLKO_005 907 3UTR 100% 10.800 7.560 N Cdx1 n/a
7 TRCN0000421584 GCCCAATGAGAAGTCTCAATC pLKO_005 1133 3UTR 100% 10.800 7.560 N Cdx1 n/a
8 TRCN0000096345 GTTTCACTACAGCCGGTACAT pLKO.1 595 CDS 100% 4.950 3.465 N Cdx1 n/a
9 TRCN0000240652 TCTGGTTCCAGAACCGCCGAA pLKO_005 678 CDS 100% 0.720 0.360 Y Nkx1-1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_009880.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.