Transcript: Mouse NM_010813.3

Mus musculus max binding protein (Mnt), mRNA.

Source:
NCBI, updated 2017-05-20
Taxon:
Mus musculus (mouse)
Gene:
Mnt (17428)
Length:
4601
CDS:
406..2181

Additional Resources:

NCBI RefSeq record:
NM_010813.3
NBCI Gene record:
Mnt (17428)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_010813.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000235811 ACGACAAGAAGACTTCGAATC pLKO_005 1163 CDS 100% 6.000 4.800 N Mnt n/a
2 TRCN0000085736 CTGTCGCACCAGCAAGTAAAT pLKO.1 2002 CDS 100% 13.200 9.240 N Mnt n/a
3 TRCN0000235813 GCTCACTGCCTGGGATCTTTA pLKO_005 4107 3UTR 100% 13.200 9.240 N Mnt n/a
4 TRCN0000235815 TGTCGCACCAGCAAGTAAATG pLKO_005 2003 CDS 100% 13.200 9.240 N Mnt n/a
5 TRCN0000235814 CACCGGCTGAAGAAGCCAAAT pLKO_005 1016 CDS 100% 10.800 7.560 N Mnt n/a
6 TRCN0000085734 CCACTGACTGTCATTCCTATT pLKO.1 664 CDS 100% 10.800 7.560 N Mnt n/a
7 TRCN0000020395 CCACAACAAATTGGAGAAGAA pLKO.1 1083 CDS 100% 4.950 3.465 N MNT n/a
8 TRCN0000085733 CCGAATGACTATGTCCAGATT pLKO.1 3850 3UTR 100% 4.950 3.465 N Mnt n/a
9 TRCN0000085737 GACGACAAGAAGACTTCGAAT pLKO.1 1162 CDS 100% 4.950 3.465 N Mnt n/a
10 TRCN0000235812 CTATTCCTGTAGTGACCAATT pLKO_005 680 CDS 100% 10.800 6.480 N Mnt n/a
11 TRCN0000085735 CCTATTCCTGTAGTGACCAAT pLKO.1 679 CDS 100% 4.950 2.970 N Mnt n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_010813.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.