Transcript: Mouse NM_011369.3

Mus musculus Shc SH2-domain binding protein 1 (Shcbp1), mRNA.

Source:
NCBI, updated 2017-06-10
Taxon:
Mus musculus (mouse)
Gene:
Shcbp1 (20419)
Length:
2187
CDS:
45..2051

Additional Resources:

NCBI RefSeq record:
NM_011369.3
NBCI Gene record:
Shcbp1 (20419)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_011369.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000216376 GATCTGTTGTCTGGTATAAAT pLKO.1 1146 CDS 100% 15.000 21.000 N Shcbp1 n/a
2 TRCN0000248580 TCGAGTTCCCTCGGGACTTAT pLKO_005 755 CDS 100% 13.200 18.480 N Shcbp1 n/a
3 TRCN0000248581 CGATGATAAATAACGTCATAC pLKO_005 1633 CDS 100% 10.800 15.120 N Shcbp1 n/a
4 TRCN0000248577 TCCATGGTGGAAGGGTTAAAT pLKO_005 885 CDS 100% 15.000 12.000 N Shcbp1 n/a
5 TRCN0000216295 GATCAAGGCTATCATGCTAAT pLKO.1 177 CDS 100% 10.800 8.640 N Shcbp1 n/a
6 TRCN0000179930 CCAGTTTAAGTGGAATGGCAA pLKO.1 2003 CDS 100% 2.640 2.112 N Shcbp1 n/a
7 TRCN0000248579 TCTTAAGTATGCTGCTTATAT pLKO_005 2096 3UTR 100% 15.000 10.500 N Shcbp1 n/a
8 TRCN0000248578 TGATCTGTTGTCTGGTATAAA pLKO_005 1145 CDS 100% 15.000 10.500 N Shcbp1 n/a
9 TRCN0000183589 GTCTTAAGTATGCTGCTTATA pLKO.1 2095 3UTR 100% 13.200 7.920 N Shcbp1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_011369.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.