Transcript: Mouse NM_011376.3

Mus musculus single-minded homolog 1 (Drosophila) (Sim1), mRNA.

Source:
NCBI, updated 2017-05-20
Taxon:
Mus musculus (mouse)
Gene:
Sim1 (20464)
Length:
7355
CDS:
247..2544

Additional Resources:

NCBI RefSeq record:
NM_011376.3
NBCI Gene record:
Sim1 (20464)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_011376.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000432952 ACGAATTGTCCTGTGCGTATA pLKO_005 1532 CDS 100% 10.800 15.120 N Sim1 n/a
2 TRCN0000419824 CCACTGCACTGTCTCGGATAA pLKO_005 2198 CDS 100% 10.800 15.120 N Sim1 n/a
3 TRCN0000085111 CGGGATTCCATACTGAGAGAT pLKO.1 1418 CDS 100% 4.950 6.930 N Sim1 n/a
4 TRCN0000085112 CTAGTTCTGATCGCATTACAA pLKO.1 2225 CDS 100% 0.000 0.000 N Sim1 n/a
5 TRCN0000435021 CACCGACATTCAAGGTTATAC pLKO_005 2701 3UTR 100% 13.200 9.240 N Sim1 n/a
6 TRCN0000015071 CCTCACAGACACAGAATACAA pLKO.1 1239 CDS 100% 5.625 3.938 N SIM1 n/a
7 TRCN0000085110 CCTTTGATGGATGCTACCAAA pLKO.1 845 CDS 100% 4.950 3.465 N Sim1 n/a
8 TRCN0000085109 GCTCTCCAGTAGCAAGTCAAA pLKO.1 1368 CDS 100% 4.950 3.465 N Sim1 n/a
9 TRCN0000015072 ACTGGCTAAATTACTGCCTTT pLKO.1 312 CDS 100% 4.050 2.835 N SIM1 n/a
10 TRCN0000085108 CCACTTATTATTTCCTGGTTA pLKO.1 5754 3UTR 100% 4.950 2.970 N Sim1 n/a
11 TRCN0000166364 CACACACACACACACACACAA pLKO.1 6636 3UTR 100% 4.950 2.475 Y KAAG1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_011376.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.