Transcript: Mouse NM_011610.3

Mus musculus tumor necrosis factor receptor superfamily, member 1b (Tnfrsf1b), mRNA.

Source:
NCBI, updated 2017-06-10
Taxon:
Mus musculus (mouse)
Gene:
Tnfrsf1b (21938)
Length:
4913
CDS:
70..1494

Additional Resources:

NCBI RefSeq record:
NM_011610.3
NBCI Gene record:
Tnfrsf1b (21938)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_011610.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000012322 GCCAAACTCCAAGCATCCTTA pLKO.1 776 CDS 100% 4.950 3.960 N Tnfrsf1b n/a
2 TRCN0000012321 GCTGATGTTAGGACTGGTGAA pLKO.1 891 CDS 100% 4.050 3.240 N Tnfrsf1b n/a
3 TRCN0000012318 GCATCCTTACATCGTTGGGTT pLKO.1 788 CDS 100% 2.640 2.112 N Tnfrsf1b n/a
4 TRCN0000012320 CCTGGCCAATATGTGAAACAT pLKO.1 247 CDS 100% 5.625 3.938 N Tnfrsf1b n/a
5 TRCN0000012319 CCTGATGAGAAATCCCAGGAT pLKO.1 982 CDS 100% 2.640 1.848 N Tnfrsf1b n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_011610.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.