Transcript: Mouse NM_011613.3

Mus musculus tumor necrosis factor (ligand) superfamily, member 11 (Tnfsf11), mRNA.

Source:
NCBI, updated 2017-06-04
Taxon:
Mus musculus (mouse)
Gene:
Tnfsf11 (21943)
Length:
2243
CDS:
155..1105

Additional Resources:

NCBI RefSeq record:
NM_011613.3
NBCI Gene record:
Tnfsf11 (21943)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_011613.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000066287 GCTGATGGTGTATGTCGTTAA pLKO.1 862 CDS 100% 10.800 15.120 N Tnfsf11 n/a
2 TRCN0000066286 CATGACGTTAAGCAACGGAAA pLKO.1 745 CDS 100% 4.050 5.670 N Tnfsf11 n/a
3 TRCN0000066285 CGCAGATGGATCCTAACAGAA pLKO.1 372 CDS 100% 4.950 3.960 N Tnfsf11 n/a
4 TRCN0000066283 GCTTTCAAAGTTCAGGACATA pLKO.1 1079 CDS 100% 4.950 3.960 N Tnfsf11 n/a
5 TRCN0000362773 ATTACCTGTACGCCAACATTT pLKO_005 792 CDS 100% 13.200 9.240 N Tnfsf11 n/a
6 TRCN0000362704 CTGATGGTGTATGTCGTTAAA pLKO_005 863 CDS 100% 13.200 9.240 N Tnfsf11 n/a
7 TRCN0000362705 ATGATAGTGTGAAGGGTTAAG pLKO_005 1484 3UTR 100% 10.800 7.560 N Tnfsf11 n/a
8 TRCN0000066284 CCCAAGTTCTCATAACCTGAT pLKO.1 898 CDS 100% 4.050 2.835 N Tnfsf11 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_011613.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.