Transcript: Human NM_013438.5

Homo sapiens ubiquilin 1 (UBQLN1), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-09-27
Taxon:
Homo sapiens (human)
Gene:
UBQLN1 (29979)
Length:
3868
CDS:
280..2049

Additional Resources:

NCBI RefSeq record:
NM_013438.5
NBCI Gene record:
UBQLN1 (29979)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_013438.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000429289 GACCAACTTGTGTTGATATTT pLKO_005 499 CDS 100% 15.000 21.000 N UBQLN1 n/a
2 TRCN0000430561 AGAGTACTACTGCGCCAAATT pLKO_005 1346 CDS 100% 13.200 18.480 N UBQLN1 n/a
3 TRCN0000004373 GCTTCTCCCATAGGTAGTTTA pLKO.1 2899 3UTR 100% 13.200 18.480 N UBQLN1 n/a
4 TRCN0000004374 AGGTCTGAGTAGCTTGGGTTT pLKO.1 747 CDS 100% 4.050 5.670 N UBQLN1 n/a
5 TRCN0000004372 GTTACAGATTCAGCAGGGTTT pLKO.1 1668 CDS 100% 4.050 3.240 N UBQLN1 n/a
6 TRCN0000004375 CTCCCAACTTTCCTCCAACAA pLKO.1 1591 CDS 100% 4.950 3.465 N UBQLN1 n/a
7 TRCN0000004371 CCTCAGCTACAGAATCCAGAA pLKO.1 1891 CDS 100% 4.050 2.835 N UBQLN1 n/a
8 TRCN0000087735 CCAGAAGTCAGATTTCAGCAA pLKO.1 1906 CDS 100% 2.640 1.320 Y Ubqln1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_013438.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.