Transcript: Mouse NM_013794.4

Mus musculus killer cell lectin-like receptor, subfamily A, member 16 (Klra16), mRNA.

Source:
NCBI, updated 2017-06-25
Taxon:
Mus musculus (mouse)
Gene:
Klra16 (27424)
Length:
1234
CDS:
106..897

Additional Resources:

NCBI RefSeq record:
NM_013794.4
NBCI Gene record:
Klra16 (27424)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_013794.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000067921 GACTGGATAACTTCCCTCATT pLKO.1 875 CDS 100% 4.950 2.970 N Klra16 n/a
2 TRCN0000256454 TGAACTGCAGGAATTTCTAAA pLKO_005 333 CDS 100% 13.200 6.600 Y Klra4 n/a
3 TRCN0000265819 TGCTGGATTGGATTGTCATAT pLKO_005 691 CDS 100% 13.200 6.600 Y Klra4 n/a
4 TRCN0000256457 TTTCCCTTCGACTGGTAATTG pLKO_005 266 CDS 100% 13.200 6.600 Y Klra4 n/a
5 TRCN0000067922 GCAAAGTGACATCAAATTGAA pLKO.1 378 CDS 100% 5.625 2.813 Y Klra16 n/a
6 TRCN0000067919 GCAGTGCTTGTGACAAACATT pLKO.1 289 CDS 100% 5.625 2.813 Y Klra16 n/a
7 TRCN0000065461 CCACAATAACTGCAGCATCAT pLKO.1 357 CDS 100% 4.950 2.475 Y Klra4 n/a
8 TRCN0000065459 CCCATCTAAACTTGCCTTGAA pLKO.1 750 CDS 100% 4.950 2.475 Y Klra4 n/a
9 TRCN0000067920 GCCTCAGAGTGTGTTCAGTTT pLKO.1 209 CDS 100% 4.950 2.475 Y Klra16 n/a
10 TRCN0000067918 TCGTGGTTCCTTCAGACGTTT pLKO.1 671 CDS 100% 4.950 2.475 Y Klra16 n/a
11 TRCN0000067967 CTGGTAATTGTTGCAGTGCTT pLKO.1 277 CDS 100% 2.640 1.320 Y Klra18 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_013794.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.