Transcript: Human NM_014872.3

Homo sapiens zinc finger and BTB domain containing 5 (ZBTB5), mRNA.

Source:
NCBI, updated 2019-05-02
Taxon:
Homo sapiens (human)
Gene:
ZBTB5 (9925)
Length:
4690
CDS:
241..2274

Additional Resources:

NCBI RefSeq record:
NM_014872.3
NBCI Gene record:
ZBTB5 (9925)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_014872.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000137283 GCCAGTTGTCAGACTGAATTT pLKO.1 2303 3UTR 100% 13.200 18.480 N ZBTB5 n/a
2 TRCN0000136728 GCGATCATGTTTGATCAGTCT pLKO.1 1009 CDS 100% 0.264 0.370 N ZBTB5 n/a
3 TRCN0000330242 ACCTTCTGATGGGAGTATTAT pLKO_005 2633 3UTR 100% 15.000 12.000 N ZBTB5 n/a
4 TRCN0000330306 GGGTAGGTGATATCCATATTT pLKO_005 1403 CDS 100% 15.000 10.500 N ZBTB5 n/a
5 TRCN0000330239 AGGCATGTAAACATTACTTAA pLKO_005 578 CDS 100% 13.200 9.240 N ZBTB5 n/a
6 TRCN0000330309 TCGTGAGCTCAGCCCTCAATT pLKO_005 698 CDS 100% 13.200 9.240 N ZBTB5 n/a
7 TRCN0000136992 CCATAGATGAGTCTGCCATTT pLKO.1 863 CDS 100% 10.800 7.560 N ZBTB5 n/a
8 TRCN0000330243 TAGAGGGAGCTCGCAAGTATG pLKO_005 2060 CDS 100% 10.800 7.560 N ZBTB5 n/a
9 TRCN0000134016 CTCTGTTGTTAAGGCATGTAA pLKO.1 567 CDS 100% 5.625 3.938 N ZBTB5 n/a
10 TRCN0000138213 CCAGGAAGATAGTGCGATCAT pLKO.1 996 CDS 100% 4.950 3.465 N ZBTB5 n/a
11 TRCN0000137377 GCTGAAGCATAAGTGGACTTT pLKO.1 4251 3UTR 100% 4.950 3.465 N ZBTB5 n/a
12 TRCN0000137350 GCTCTGTGATTGTGTCATTGT pLKO.1 306 CDS 100% 4.950 2.970 N ZBTB5 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_014872.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.