Transcript: Human NM_015260.4

Homo sapiens SIN3 transcription regulator family member B (SIN3B), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-08-08
Taxon:
Homo sapiens (human)
Gene:
SIN3B (23309)
Length:
5134
CDS:
24..3512

Additional Resources:

NCBI RefSeq record:
NM_015260.4
NBCI Gene record:
SIN3B (23309)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_015260.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000234602 CAAGCAGCAGGTGCCGTATAA pLKO_005 443 CDS 100% 13.200 18.480 N SIN3B n/a
2 TRCN0000107809 GACGATGTCTACAGCCTATTT pLKO.1 2328 CDS 100% 13.200 18.480 N SIN3B n/a
3 TRCN0000234603 GACGGGATAAGCCGGGAAATT pLKO_005 1170 CDS 100% 13.200 18.480 N SIN3B n/a
4 TRCN0000234601 TCGGATATAGAATAGACATTC pLKO_005 340 CDS 100% 10.800 15.120 N SIN3B n/a
5 TRCN0000107807 CCGTGCCATTTATCGCATCTA pLKO.1 1646 CDS 100% 4.950 6.930 N SIN3B n/a
6 TRCN0000107806 CCTCGGATATAGAATAGACAT pLKO.1 338 CDS 100% 4.950 6.930 N SIN3B n/a
7 TRCN0000234605 TGTATACACGCACAGATATTT pLKO_005 4312 3UTR 100% 15.000 10.500 N SIN3B n/a
8 TRCN0000234604 GGTTCGTGGACAGACGATTAC pLKO_005 1314 CDS 100% 10.800 7.560 N SIN3B n/a
9 TRCN0000107805 CGCACAGATATTTATTCCTTT pLKO.1 4320 3UTR 100% 4.950 3.465 N SIN3B n/a
10 TRCN0000107808 GTGCCGTATAAAGAGGACAAA pLKO.1 453 CDS 100% 4.950 3.465 N SIN3B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_015260.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.