Transcript: Human NM_015704.3

Homo sapiens desumoylating isopeptidase 1 (DESI1), mRNA.

Source:
NCBI, updated 2019-05-02
Taxon:
Homo sapiens (human)
Gene:
DESI1 (27351)
Length:
3780
CDS:
205..711

Additional Resources:

NCBI RefSeq record:
NM_015704.3
NBCI Gene record:
DESI1 (27351)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_015704.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000141997 GCGGAAGATTCCTTCTTACAT pLKO.1 567 CDS 100% 5.625 4.500 N DESI1 n/a
2 TRCN0000140006 GAGGCCTACAACCTCTTTGAA pLKO.1 499 CDS 100% 5.625 3.938 N DESI1 n/a
3 TRCN0000145540 CTACAACCTCTTTGAACACAA pLKO.1 504 CDS 100% 4.950 3.465 N DESI1 n/a
4 TRCN0000141462 GCACAAGGATGAGTTCTTCTT pLKO.1 333 CDS 100% 4.950 3.465 N DESI1 n/a
5 TRCN0000139883 GATGAGTTCTTCTTCGGCAGT pLKO.1 340 CDS 100% 2.160 1.512 N DESI1 n/a
6 TRCN0000144328 CAGAAGAAATCTTTCTGGAGT pLKO.1 443 CDS 100% 0.264 0.185 N DESI1 n/a
7 TRCN0000140293 GCACACATCCATAGTTGTGCA pLKO.1 315 CDS 100% 0.264 0.185 N DESI1 n/a
8 TRCN0000144327 CAGAAGTCACAGAAGAAATCT pLKO.1 434 CDS 100% 5.625 3.375 N DESI1 n/a
9 TRCN0000222574 CGCCTGTAATCCCAGCACTTT pLKO.1 1969 3UTR 100% 4.950 2.475 Y ERAP2 n/a
10 TRCN0000078113 GCCTGTAATCCCAGCACTTTA pLKO.1 1970 3UTR 100% 13.200 6.600 Y LIAS n/a
11 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 1869 3UTR 100% 5.625 2.813 Y KLHL30 n/a
12 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 1869 3UTR 100% 5.625 2.813 Y EID2B n/a
13 TRCN0000138772 GCAGGAGAATCGCTTGAACTT pLKO.1 2135 3UTR 100% 4.950 2.475 Y DCAF11 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_015704.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.