Transcript: Human NM_016052.4

Homo sapiens ribosomal RNA processing 15 homolog (RRP15), mRNA.

Source:
NCBI, updated 2019-09-28
Taxon:
Homo sapiens (human)
Gene:
RRP15 (51018)
Length:
7765
CDS:
25..873

Additional Resources:

NCBI RefSeq record:
NM_016052.4
NBCI Gene record:
RRP15 (51018)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_016052.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000243344 ATCAAGTGTTGGGACTAATAT pLKO_005 273 CDS 100% 15.000 10.500 N RRP15 n/a
2 TRCN0000243345 CCTGAAAGTAAACCTACTATT pLKO_005 337 CDS 100% 13.200 9.240 N RRP15 n/a
3 TRCN0000243348 GCAAGTGACTCTGATACATAA pLKO_005 853 CDS 100% 13.200 9.240 N RRP15 n/a
4 TRCN0000167448 GTCATGTCTATTGGTGTATTA pLKO.1 1149 3UTR 100% 13.200 9.240 N RRP15 n/a
5 TRCN0000243347 TATTCTGATGATGACGCAATA pLKO_005 193 CDS 100% 10.800 7.560 N RRP15 n/a
6 TRCN0000172508 CTGAGCCCTGTGACAAAGAAA pLKO.1 236 CDS 100% 5.625 3.938 N RRP15 n/a
7 TRCN0000243346 GGTTGATGTTCTTAGTATTTA pLKO_005 3833 3UTR 100% 15.000 9.000 N RRP15 n/a
8 TRCN0000166364 CACACACACACACACACACAA pLKO.1 6033 3UTR 100% 4.950 2.475 Y KAAG1 n/a
9 TRCN0000073773 CCTCTCAAGTAGCTGGGACTA pLKO.1 1574 3UTR 100% 4.050 2.025 Y TINAGL1 n/a
10 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 1717 3UTR 100% 5.625 2.813 Y KLHL30 n/a
11 TRCN0000264189 CAAGTAGCTGGGACTACAGGA pLKO_005 1579 3UTR 100% 2.640 1.320 Y LINC01098 n/a
12 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 1717 3UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_016052.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.