Transcript: Mouse NM_016851.2

Mus musculus interferon regulatory factor 6 (Irf6), mRNA.

Source:
NCBI, updated 2017-06-04
Taxon:
Mus musculus (mouse)
Gene:
Irf6 (54139)
Length:
4140
CDS:
192..1595

Additional Resources:

NCBI RefSeq record:
NM_016851.2
NBCI Gene record:
Irf6 (54139)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_016851.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000321531 GTCAGCGGACATGCCATTTAT pLKO_005 1107 CDS 100% 15.000 21.000 N Irf6 n/a
2 TRCN0000321533 ACGATCCTGACCCAGCTAAAT pLKO_005 406 CDS 100% 13.200 18.480 N Irf6 n/a
3 TRCN0000321594 GACGTTAGACAGATCGTTTAA pLKO_005 1872 3UTR 100% 13.200 18.480 N Irf6 n/a
4 TRCN0000085331 GCAAACTATGACGGTGAGCAA pLKO.1 905 CDS 100% 2.640 3.696 N Irf6 n/a
5 TRCN0000360595 GAGATTTGATGTCGAAGTTTA pLKO_005 1815 3UTR 100% 13.200 10.560 N Irf6 n/a
6 TRCN0000085329 CGCATGATCTATGAGATGTTT pLKO.1 1389 CDS 100% 5.625 4.500 N Irf6 n/a
7 TRCN0000085332 CGTGGGAAGGAGTATGGGCAA pLKO.1 888 CDS 100% 0.720 0.576 N Irf6 n/a
8 TRCN0000360666 ACCCAGGGCTCTGTCATTAAT pLKO_005 546 CDS 100% 15.000 10.500 N Irf6 n/a
9 TRCN0000085330 CCTTGGGATGAGAAAGATAAT pLKO.1 588 CDS 100% 13.200 9.240 N Irf6 n/a
10 TRCN0000360665 CTTGGGATGAGAAAGATAATG pLKO_005 589 CDS 100% 13.200 9.240 N Irf6 n/a
11 TRCN0000321534 GACTGACTTGGACATCAAATT pLKO_005 860 CDS 100% 13.200 9.240 N Irf6 n/a
12 TRCN0000321532 TGAATCCTGTGAAGATCTATC pLKO_005 505 CDS 100% 10.800 7.560 N Irf6 n/a
13 TRCN0000085328 CCGTTCTTGTTCAGAGACTTT pLKO.1 2531 3UTR 100% 4.950 3.465 N Irf6 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_016851.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.