Transcript: Human NM_017520.4

Homo sapiens M-phase phosphoprotein 8 (MPHOSPH8), mRNA.

Source:
NCBI, updated 2019-08-03
Taxon:
Homo sapiens (human)
Gene:
MPHOSPH8 (54737)
Length:
4239
CDS:
91..2673

Additional Resources:

NCBI RefSeq record:
NM_017520.4
NBCI Gene record:
MPHOSPH8 (54737)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_017520.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000360126 GACATCGTACGACTCGTAATT pLKO_005 2131 CDS 100% 13.200 18.480 N MPHOSPH8 n/a
2 TRCN0000085440 GCCAAGGTTAAGTTGCTAATA pLKO.1 2626 CDS 100% 13.200 18.480 N Mphosph8 n/a
3 TRCN0000302162 GCCAAGGTTAAGTTGCTAATA pLKO_005 2626 CDS 100% 13.200 18.480 N Mphosph8 n/a
4 TRCN0000360125 TTGCGAAGCAGTCTAACAATG pLKO_005 2207 CDS 100% 10.800 15.120 N MPHOSPH8 n/a
5 TRCN0000117922 CCTCTTGCAGTTAAGCCTGTT pLKO.1 2781 3UTR 100% 4.050 5.670 N MPHOSPH8 n/a
6 TRCN0000117926 GCTAGAGAACAAGAACGCTTT pLKO.1 1128 CDS 100% 4.050 5.670 N MPHOSPH8 n/a
7 TRCN0000367937 CAGTGTCCAGACTGCGTATTT pLKO_005 2865 3UTR 100% 13.200 9.240 N MPHOSPH8 n/a
8 TRCN0000360127 TGGAGTAGTGGGCGAAGATAA pLKO_005 183 CDS 100% 13.200 9.240 N MPHOSPH8 n/a
9 TRCN0000117925 CAAGCTGTAGTTCTGAATGAT pLKO.1 2503 CDS 100% 5.625 3.938 N MPHOSPH8 n/a
10 TRCN0000117924 GCTTCTTGAATTTAGGAAGAA pLKO.1 396 CDS 100% 0.495 0.347 N MPHOSPH8 n/a
11 TRCN0000117923 GCTGTTTATCTTCCATGCAAA pLKO.1 2433 CDS 100% 4.950 2.970 N MPHOSPH8 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_017520.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.