Transcript: Human NM_018301.5

Homo sapiens RNA binding motif protein 41 (RBM41), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-08-22
Taxon:
Homo sapiens (human)
Gene:
RBM41 (55285)
Length:
6933
CDS:
50..1291

Additional Resources:

NCBI RefSeq record:
NM_018301.5
NBCI Gene record:
RBM41 (55285)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_018301.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000137155 GCTGAGTATGAAGGGTAAAGT pLKO.1 1495 3UTR 100% 5.625 7.875 N RBM41 n/a
2 TRCN0000134374 GACAGATGATATGCTGAGTAT pLKO.1 1483 3UTR 100% 4.950 6.930 N RBM41 n/a
3 TRCN0000137894 GCTACAGGTAGCACTACAGAA pLKO.1 1256 CDS 100% 4.950 6.930 N RBM41 n/a
4 TRCN0000133976 CAACGGATTATTCCTAAGGAT pLKO.1 1547 3UTR 100% 3.000 4.200 N RBM41 n/a
5 TRCN0000420564 GGGAACCAAACAAGGTATTAT pLKO_005 963 CDS 100% 15.000 12.000 N RBM41 n/a
6 TRCN0000414195 AGAGCCCATTTGCCATATTTC pLKO_005 1693 3UTR 100% 13.200 9.240 N RBM41 n/a
7 TRCN0000414150 GCAAGCATTGCATCTAGTAAA pLKO_005 1141 CDS 100% 13.200 9.240 N RBM41 n/a
8 TRCN0000135042 CCATTGAGGAATGTATGTCTA pLKO.1 165 CDS 100% 4.950 3.465 N RBM41 n/a
9 TRCN0000137915 GTCAGAGGAAGAGATCCGAAA pLKO.1 913 CDS 100% 4.050 2.835 N RBM41 n/a
10 TRCN0000166201 CATGGTGAAACCCTGTCTCTA pLKO.1 4663 3UTR 100% 4.950 2.475 Y ORAI2 n/a
11 TRCN0000222574 CGCCTGTAATCCCAGCACTTT pLKO.1 4585 3UTR 100% 4.950 2.475 Y ERAP2 n/a
12 TRCN0000078113 GCCTGTAATCCCAGCACTTTA pLKO.1 4586 3UTR 100% 13.200 6.600 Y LIAS n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_018301.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.