Transcript: Mouse NM_018872.2

Mus musculus transmembrane protein 131 (Tmem131), mRNA.

Source:
NCBI, updated 2019-09-21
Taxon:
Mus musculus (mouse)
Gene:
Tmem131 (56030)
Length:
6563
CDS:
183..5816

Additional Resources:

NCBI RefSeq record:
NM_018872.2
NBCI Gene record:
Tmem131 (56030)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_018872.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000246000 ATTATGCGCCAAGATCTAATT pLKO_005 6213 3UTR 100% 13.200 18.480 N TMEM131 n/a
2 TRCN0000217267 CAGTCAAGAACTAGGTAATAC pLKO.1 4802 CDS 100% 13.200 18.480 N Tmem131 n/a
3 TRCN0000216020 CGATTCTACTACAAACGATTA pLKO.1 2322 CDS 100% 10.800 15.120 N Tmem131 n/a
4 TRCN0000435474 GTGGATCCAAATCACGAAATC pLKO_005 4711 CDS 100% 10.800 15.120 N Tmem131 n/a
5 TRCN0000193221 CCTCAACTGAAATGTTAGATT pLKO.1 1147 CDS 100% 5.625 7.875 N Tmem131 n/a
6 TRCN0000194384 CAGAAATGTAAGCCAGCGTAA pLKO.1 6314 3UTR 100% 4.050 5.670 N Tmem131 n/a
7 TRCN0000430052 ATTCAGTCGGAGAGCATAATA pLKO_005 369 CDS 100% 15.000 12.000 N Tmem131 n/a
8 TRCN0000420766 CCGTCTTTGCAGATAAGTTAG pLKO_005 2800 CDS 100% 10.800 8.640 N Tmem131 n/a
9 TRCN0000422242 AGAAGTTCTAGATGGTTATTT pLKO_005 1454 CDS 100% 15.000 10.500 N Tmem131 n/a
10 TRCN0000436995 CACAGCCTTCATCCGGATAAA pLKO_005 1049 CDS 100% 13.200 9.240 N Tmem131 n/a
11 TRCN0000217090 CAGGAGAATCGTTGGTATTTC pLKO.1 3689 CDS 100% 13.200 9.240 N Tmem131 n/a
12 TRCN0000423700 GCAGTCAAGAACTAGGTAATA pLKO_005 4801 CDS 100% 13.200 9.240 N Tmem131 n/a
13 TRCN0000175528 CATTACAGTTAAGGGAGTGAT pLKO.1 6117 3UTR 100% 4.950 3.465 N Tmem131 n/a
14 TRCN0000173139 CCAGAGAAGTTGGAATGAGTT pLKO.1 5417 CDS 100% 4.950 3.465 N Tmem131 n/a
15 TRCN0000173637 CCTCGGTTCATATCAACAGAA pLKO.1 443 CDS 100% 4.950 3.465 N Tmem131 n/a
16 TRCN0000175781 GCTGTTGTGCTTAAAGACAAA pLKO.1 5987 3UTR 100% 4.950 3.465 N Tmem131 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_018872.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.