Transcript: Human NM_018999.4

Homo sapiens coiled-coil serine rich protein 2 (CCSER2), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-05-31
Taxon:
Homo sapiens (human)
Gene:
CCSER2 (54462)
Length:
7738
CDS:
260..2764

Additional Resources:

NCBI RefSeq record:
NM_018999.4
NBCI Gene record:
CCSER2 (54462)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_018999.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000430752 CTTCATATTCTTCGATCAATA pLKO_005 741 CDS 100% 13.200 9.240 N CCSER2 n/a
2 TRCN0000429814 AGAACCAACAGCTATCCATTA pLKO_005 1023 CDS 100% 10.800 7.560 N CCSER2 n/a
3 TRCN0000426136 GCTCAAGAGCCTTATCATTTG pLKO_005 2943 3UTR 100% 10.800 7.560 N CCSER2 n/a
4 TRCN0000432774 TAATAGAGCTGTGGATCTTAC pLKO_005 991 CDS 100% 10.800 7.560 N CCSER2 n/a
5 TRCN0000062106 CCCAGGTGTAACTTCTACTTT pLKO.1 1177 CDS 100% 5.625 3.938 N CCSER2 n/a
6 TRCN0000062107 CCAGAGGAAATGTCTCTCAAA pLKO.1 1550 CDS 100% 4.950 3.465 N CCSER2 n/a
7 TRCN0000062105 GCATGATATTCAACTGTCATT pLKO.1 2344 CDS 100% 4.950 3.465 N CCSER2 n/a
8 TRCN0000062104 GCTCAGAAGATGTTTGTTGAT pLKO.1 2195 CDS 100% 4.950 3.465 N CCSER2 n/a
9 TRCN0000062103 GCTGCTAATAAGGACCAAGAA pLKO.1 1337 CDS 100% 4.950 3.465 N CCSER2 n/a
10 TRCN0000430981 GCCACCATGCCTGGCTAATTT pLKO_005 4812 3UTR 100% 15.000 7.500 Y GTF2IRD2 n/a
11 TRCN0000165027 GAACTCCTGACCTCAAGTGAT pLKO.1 4885 3UTR 100% 4.950 2.475 Y LOC387873 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_018999.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12042 pDONR223 100% 62.6% 60.8% None (many diffs) n/a
2 ccsbBroad304_12042 pLX_304 0% 62.6% 60.8% V5 (many diffs) n/a
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