Construct: ORF ccsbBroadEn_12042
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013899.1_s300c1, BRDN0000386535
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CCSER2 (54462)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 54462 | CCSER2 | coiled-coil serine rich pro... | NM_001284241.2 | 94.8% | 94.8% | 1_87del |
| 2 | human | 54462 | CCSER2 | coiled-coil serine rich pro... | XM_011539872.2 | 83.5% | 80.9% | (many diffs) |
| 3 | human | 54462 | CCSER2 | coiled-coil serine rich pro... | XM_017016341.1 | 81% | 78.5% | (many diffs) |
| 4 | human | 54462 | CCSER2 | coiled-coil serine rich pro... | XM_011539871.3 | 69.5% | 67.4% | (many diffs) |
| 5 | human | 54462 | CCSER2 | coiled-coil serine rich pro... | XR_945776.3 | 65.1% | (many diffs) | |
| 6 | human | 54462 | CCSER2 | coiled-coil serine rich pro... | NM_018999.4 | 62.6% | 60.8% | (many diffs) |
| 7 | human | 54462 | CCSER2 | coiled-coil serine rich pro... | NM_001351292.2 | 62.4% | 60.6% | (many diffs) |
| 8 | human | 54462 | CCSER2 | coiled-coil serine rich pro... | XM_005269905.4 | 61.4% | 59.6% | (many diffs) |
| 9 | human | 54462 | CCSER2 | coiled-coil serine rich pro... | NM_001351290.2 | 61.2% | 59.4% | (many diffs) |
| 10 | human | 54462 | CCSER2 | coiled-coil serine rich pro... | NM_001284240.2 | 49.9% | 48.5% | (many diffs) |
| 11 | human | 54462 | CCSER2 | coiled-coil serine rich pro... | XM_017016340.2 | 49.9% | 48.5% | (many diffs) |
| 12 | human | 54462 | CCSER2 | coiled-coil serine rich pro... | XR_001747112.1 | 49.4% | (many diffs) | |
| 13 | human | 54462 | CCSER2 | coiled-coil serine rich pro... | XR_002956983.1 | 41.7% | (many diffs) | |
| 14 | human | 54462 | CCSER2 | coiled-coil serine rich pro... | XR_001747113.1 | 20.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1680
- ORF length:
- 1614
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCC AAATGGGACA CCTGTTAATT TATTAGGAAC TTCCAAGAAT AGTAATGTCA 121 AAAGTTACAT CAAAAATAAT GGCTCTGATT GTCCATCATC TCATTCATTT AATTGGAGGA 181 AAGCAAATAA ATATCAGCTT TGTGCACAAG GTGTCGAAGA GCCTAACAAT ACTCAAAATT 241 CACATGATAA AATAATTGAT CCTGAAAAAC GTGTTCCTAC TCAAGGAATG TTTGATAAAA 301 ATGGGATAAA GGGAGGTTTG AAAAGTGTTT CTTTATTCAC ATCAAAGTTA GCAAAGCCAT 361 CCACTATGTT TGTGTCATCT ACAGAGGAGT TAAACCAAAA GTCTTTTTCT GGACCATCTA 421 ATTTGGGTAA ATTCACCAAA GGCACATTAT TAGGAAGGAC TTCATATTCT TCGATCAATA 481 CTCCAAAATC ACAGTTGAAT GGATTTTATG GAAACCGATC AGCTGGTAGC ATGCAAAGGC 541 CTAGAGCGAA CTCCTGTGCC ACCAGAAGCA GTTCTGGAGA AAGCTTAGCT CAATCCCCAG 601 ACAGTAGTAA ATCTATTAAT TGTGAAAAAA TGGTAAGGTC ACAAAGTTTT TCACATTCCA 661 TTCAGAATTC ATTCCTTCCA CCTTCATCTA TAACCAGATC ACATTCCTTT AATAGAGCTG 721 TGGATCTTAC AAAGCCTTAT CAGAACCAAC AGCTATCCAT TAGAGTGCCT CTACGGTCAA 781 GTATGCTAAC AAGAAATTCC CGGCAGCCAG AAGTACTCAA TGGGAATGAA CATTTGGGGT 841 ATGGATTTAA TAGGCCTTAT GCTGCTGGTG GAAAGAAGTT GGCTTTACCA AATGGCCCAG 901 GTGTAACTTC TACTTTAGGT TATAGAATGG TTCATCCCTC TCTACTGAAA TCTAGCCGAT 961 CTCCATTTTC TGGGACTATG ACAGTTGATG GAAATAAAAA TTCACCTGCT GACACATGTG 1021 TAGAGGAAGA TGCTACAGTT TTGGCTAAGG ACAGAGCTGC TAATAAGGAC CAAGAACTGA 1081 TTGAAAATGA AAGTTATAGA ACAAAAAACA ACCAGACCAT GAAACATGAT GCTAAAATGA 1141 GATACCTGAG TGATGATGTG GATGACATTT CCTTGTCGTC TTTGTCATCT TCTGATAAGA 1201 ATGATTTAAG TGAAGACTTT AGTGATGATT TTATAGATAT AGAAGACTCC AACAGAACTA 1261 GAATAACTCC AGAGGAAATG TCTCTCAAAG AAGAGAAACA TGAAAATGGG CCACCACAGG 1321 ATATGTTTGA TTCCCCCAAG GAAAATGAAA AAGCCTTCAG TAAAACTGAT GAATGGATAG 1381 ATATAAGTGT CTCTGACAGG AGTGAATGTA CAAAACATAC TTCTGGGAAT AATTTGGTTT 1441 CACCAGATAC AGACTACAGA GCTGGTTCTT CGTTTGAACT CTCTCCATCT GATAGCTCTG 1501 ATGGAACATA CATGTGGGAT GAAGAAGGCT TGGAACCCAT TGGAAATGTC CATCCAGTTG 1561 GGAGCTATGA GTCCTCTGAA ATGAACAGCA TAGTATGTAT GGATTTATAT ACTCTTGGAA 1621 TATTTTGTTT ACCCTACTAT AGAGAGACTT GTGATATGAT TGATTTTGTA AAAAATTTAT 1681 GCCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca 1741 acgaac