Transcript: Mouse NM_019998.3

Mus musculus asparagine-linked glycosylation 2 (alpha-1,3-mannosyltransferase) (Alg2), mRNA.

Source:
NCBI, updated 2017-05-21
Taxon:
Mus musculus (mouse)
Gene:
Alg2 (56737)
Length:
3062
CDS:
82..1329

Additional Resources:

NCBI RefSeq record:
NM_019998.3
NBCI Gene record:
Alg2 (56737)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_019998.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000313167 CGGCGTAAGAGGGTCCTATTT pLKO_005 466 CDS 100% 13.200 18.480 N Alg2 n/a
2 TRCN0000110468 CCTCTCTATCAACCGATACGA pLKO.1 765 CDS 100% 3.000 4.200 N Alg2 n/a
3 TRCN0000110466 CGGTGGTTATGACGATAGGAT pLKO.1 882 CDS 100% 3.000 4.200 N Alg2 n/a
4 TRCN0000313242 AGTACACTGCTTCCGTCTTTA pLKO_005 614 CDS 100% 13.200 9.240 N Alg2 n/a
5 TRCN0000110467 GCTCTACCCATCTCTGAATAT pLKO.1 675 CDS 100% 13.200 9.240 N Alg2 n/a
6 TRCN0000312188 GCTCTACCCATCTCTGAATAT pLKO_005 675 CDS 100% 13.200 9.240 N Alg2 n/a
7 TRCN0000313168 ATTTGACTTCAGAGCGTAATG pLKO_005 1714 3UTR 100% 10.800 7.560 N Alg2 n/a
8 TRCN0000110469 GCTGTACCAGTATGTCACGAA pLKO.1 1299 CDS 100% 2.640 1.848 N Alg2 n/a
9 TRCN0000349372 GCTGTACCAGTATGTCACGAA pLKO_005 1299 CDS 100% 2.640 1.848 N Alg2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_019998.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.