Transcript: Mouse NM_020051.1

Mus musculus achaete-scute family bHLH transcription factor 3 (Ascl3), mRNA.

Source:
NCBI, updated 2017-05-13
Taxon:
Mus musculus (mouse)
Gene:
Ascl3 (56787)
Length:
706
CDS:
61..585

Additional Resources:

NCBI RefSeq record:
NM_020051.1
NBCI Gene record:
Ascl3 (56787)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_020051.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000086584 CTCTCTTGTACCCGGATGAAT pLKO.1 497 CDS 100% 5.625 7.875 N Ascl3 n/a
2 TRCN0000232283 CCATGCCTTACACCAACTACA pLKO_005 287 CDS 100% 4.950 6.930 N Ascl3 n/a
3 TRCN0000086587 CGAGTCAAGTGTGTGAACGAA pLKO.1 370 CDS 100% 3.000 4.200 N Ascl3 n/a
4 TRCN0000232285 TCTCTTGTACCCGGATGAATC pLKO_005 498 CDS 100% 10.800 8.640 N Ascl3 n/a
5 TRCN0000232282 ACACCCTGATCATGAACAATT pLKO_005 239 CDS 100% 13.200 9.240 N Ascl3 n/a
6 TRCN0000086586 CACCCTGATCATGAACAATTA pLKO.1 240 CDS 100% 13.200 9.240 N Ascl3 n/a
7 TRCN0000232281 CATGGTCACTGTCCACCTATG pLKO_005 156 CDS 100% 6.000 4.200 N Ascl3 n/a
8 TRCN0000086585 GACACCCTGATCATGAACAAT pLKO.1 238 CDS 100% 5.625 3.938 N Ascl3 n/a
9 TRCN0000086583 GCAACGAGTCAAGTGTGTGAA pLKO.1 366 CDS 100% 4.950 3.465 N Ascl3 n/a
10 TRCN0000232284 CTCAGAGCTGCCATCAAATAT pLKO_005 460 CDS 100% 15.000 9.000 N Ascl3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_020051.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.