Transcript: Human NM_020863.4

Homo sapiens zinc finger and AT-hook domain containing (ZFAT), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-08-22
Taxon:
Homo sapiens (human)
Gene:
ZFAT (57623)
Length:
4594
CDS:
169..3900

Additional Resources:

NCBI RefSeq record:
NM_020863.4
NBCI Gene record:
ZFAT (57623)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_020863.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000148619 CCTTGGTATCAAGTGAGGTAA pLKO.1 4443 3UTR 100% 4.950 6.930 N ZFAT n/a
2 TRCN0000148980 GCCACGTAATTCAGAAACACA pLKO.1 2528 CDS 100% 3.000 4.200 N ZFAT n/a
3 TRCN0000131174 GCCATTCAGCAGACACCTTAT pLKO.1 910 CDS 100% 10.800 8.640 N ZFAT n/a
4 TRCN0000148961 GCACCAAATGGGAGTTCAATA pLKO.1 3320 CDS 100% 13.200 9.240 N ZFAT n/a
5 TRCN0000150021 CAACAAGGTCTTCAAGTTCAA pLKO.1 996 CDS 100% 4.950 3.465 N ZFAT n/a
6 TRCN0000147064 CACTTGTGAATACTGCAACAA pLKO.1 981 CDS 100% 4.950 3.465 N ZFAT n/a
7 TRCN0000148788 CATCTGCATTATCGTGCTGAA pLKO.1 570 CDS 100% 4.050 2.835 N ZFAT n/a
8 TRCN0000129521 GCACAAGAAGATCAAGCAGCA pLKO.1 1212 CDS 100% 2.160 1.512 N ZFAT n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_020863.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.